compfr | R Documentation |
This functions performs the computation of a Fruchterman-Rheingold graph layout based on an adjacency matrix derived
from the distance object in slot distances
using the igraph package.
compfr(object, knn = 10, rseed = 15555)
object |
|
knn |
Positive integer number of nearest neighbours used for the inference of the Fruchterman-Rheingold layout. Default is |
rseed |
Integer number. Random seed to enforce reproducible layouts. |
SCseq
object with layout coordinates stored in slot fr
.
sc <- SCseq(intestinalDataSmall)
sc <- filterdata(sc)
sc <- compdist(sc)
sc <- clustexp(sc)
sc <- findoutliers(sc)
sc <- compfr(sc)
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