cellsfromtree | R Documentation |
This function extracts a vector of cells on a given differentiation trajectory in pseudo-temporal order determined from the projection coordinates.
cellsfromtree(object, z)
object |
|
z |
Vector of valid cluster numbers ordered along the trajectory. |
A list ot four components:
f |
a vector of cells ids ordered along the trajectory defined by |
g |
a vector of integer number. Number |
sc <- SCseq(intestinalDataSmall)
sc <- filterdata(sc)
sc <- compdist(sc)
sc <- clustexp(sc)
sc <- findoutliers(sc)
sc <- comptsne(sc)
ltr <- Ltree(sc)
ltr <- compentropy(ltr)
ltr <- projcells(ltr)
ltr <- lineagegraph(ltr)
ltr <- comppvalue(ltr)
x <- cellsfromtree(ltr,c(1,3,6,2))
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