lineagegraph | R Documentation |
This function assembles a lineage graph based on the cell projections onto inter-cluster links.
lineagegraph(object, verbose = TRUE)
object |
|
verbose |
logical. If |
An Ltree class object with lineage graph-related data stored in slots ltcoord
, prtree
, and cdata
.
sc <- SCseq(intestinalDataSmall)
sc <- filterdata(sc)
sc <- compdist(sc)
sc <- clustexp(sc)
sc <- findoutliers(sc)
sc <- comptsne(sc)
ltr <- Ltree(sc)
ltr <- compentropy(ltr)
ltr <- projcells(ltr)
ltr <- lineagegraph(ltr)
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