compentropy: Compute transcriptome entropy of each cell

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Compute transcriptome entropy of each cell

Description

This function computes the transcriptome entropy for each cell.

Usage

compentropy(object)

Arguments

object

Ltree class object.

Value

An Ltree class object with a vector of entropies for each cell in the same order as column names in slot sc@ndata.

Examples

sc <- SCseq(intestinalDataSmall)
sc <- filterdata(sc)
sc <- compdist(sc)
sc <- clustexp(sc)
sc <- findoutliers(sc)
sc <- comptsne(sc)
ltr <- Ltree(sc)
ltr <- compentropy(ltr)

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.