intestinalDataSmall: Single-cell transcriptome data of intestinal epithelial cells

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Single-cell transcriptome data of intestinal epithelial cells

Description

This dataset is a smaller subset of the original dataset, which contains gene expression values, i. e. transcript counts, of 278 intestinal epithelial cells. The dataset is included for quick testing and examples. Only cells with >10,000 transcripts per cell and only genes with >20 transcript counts in >10 cells were retained.

Usage

intestinalDataSmall

Format

A sparse matrix (using the Matrix) with cells as columns and genes as rows. Entries are raw transcript counts.

Value

None

References

Grün et al. (2016) Cell Stem Cell 19(2): 266-77 <DOI:10.1016/j.stem.2016.05.010> (PubMed)

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.