getfdata: Extracting filtered expression data

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Extracting filtered expression data

Description

This functions allows the extraction of a filtered and normalized expression matrix

Usage

getfdata(object, g = NULL, n = NULL)

Arguments

object	SCseq class object.
g	Vector of gene names to be included corresponding to a subset of valid row names of the ndata slot of the SCseq object. Default is NULL and data for all genes remaining after filtering by the filterdata function are shown.
n	Vector of valid column names corresponding to a subset of valid column names of the ndata slot of the SCseq object. Default is NULL and data for all cells remaining after filtering by the filterdata function are shown.

Value

Matrix of filtered expression data with genes as rows and cells as columns.

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.