getFilteredCounts: Function for filtering count data

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Function for filtering count data

Description

This function discards lowly expressed genes from a count matrix stored in an SCseq object.

Usage

getFilteredCounts(object, minnumber = 5, minexpr = 5)

Arguments

object	SCseq class object.
minnumber	Integer number greater or equal to zero. Minimum number of cells required to have at least minexpr transcript counts for a gene to not be discarded. Default is 5.
minexpr	Integer number greater or equal to zero. Minimum expression of a gene in at least minnumber cells to not be discarded. Default is 5.

Value

Filtered expression matrix.

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.