View source: R/VarID_functions.R
fitBackVar | R Documentation |
This funtion fits a second order polynomial to the variance-mean dependence across all genes in log space.
fitBackVar(x, mthr = -1)
x |
Matrix of transcript counts with genes as rows and cells as columns. |
mthr |
Real number. Threshold of log2 mean expression. Genes with mean expression |
List object of four components:
fit |
model fit as returned by the |
genes |
genes with expression variance greater than the polynomial fit. |
m |
mean expression of all genes |
v |
expression variance of all genes |
bg <- fitBackVar(intestinalDataSmall)
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