RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

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246
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RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
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API

API for RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Global functions
CCcorrect Man page Source code
Ltree Man page
Ltree-class Man page
PAdjust Source code
ProbFun Source code
QP Source code
RaceID Man page
RaceID-package Man page
SCseq Man page
SCseq-class Man page
Seurat2SCseq Man page Source code
applyColVar Source code
applyMean Source code
applyMeanReg Source code
applyNoise Source code
applyNoiseReg Source code
applyProb Source code
applyRowVar Source code
barplotgene Man page Source code
baseLineVar Man page Source code
binOutlier Source code
branchcells Man page Source code
calcAlphaG Man page Source code
calcVar Man page Source code
calcVarFit Man page Source code
cc_genes Man page
cellsfromtree Man page Source code
cleanNN Man page Source code
clustdiffgenes Man page Source code
clustexp Man page Source code
clustfun Source code
clustheatmap Man page Source code
compMean Man page Source code
compNoise Man page Source code
compResiduals Source code
compResiduals0 Source code
compTBNoise Man page Source code
compdist Man page Source code
compentropy Man page Source code
compfr Man page Source code
compmedoids Man page Source code
compproj Source code
comppvalue Man page Source code
compscore Man page Source code
comptsne Man page Source code
compumap Man page Source code
corrVar Man page Source code
createKnnMatrix Man page Source code
diffNoisyGenes Man page Source code
diffNoisyGenesTB Man page
diffexpnb Man page Source code
diffgenes Man page Source code
dist.gen Source code
extractCounts Man page Source code
filterdata Man page Source code
findoutliers Man page Source code
fitBackVar Man page Source code
fitGammaRt Man page Source code
fitLogVarLogMean Man page Source code
fitNBtb Man page Source code
fitNBtbCl Man page Source code
fitVarMean Source code
fitbackground Source code
fractDotPlot Man page Source code
getExpData Man page Source code
getFilteredCounts Man page Source code
getFormula Source code
getFormula0 Source code
getNode Man page Source code
getRegData Source code
getfdata Man page Source code
getproj Man page Source code
gm_mean Source code
gradp Source code
graphCluster Man page Source code
imputeexp Man page Source code
inspectKNN Man page Source code
intestinalData Man page
intestinalDataSmall Man page
lineagegraph Man page Source code
lsize Source code
lvar Source code
maxNoisyGenes Man page Source code
maxNoisyGenesTB Man page Source code
mySize Source code
myVar Source code
nbRegr Source code
nbRegr0 Source code
noiseBaseFit Man page Source code
pdishuffle Source code
plot.err.bars.x Source code
plot.err.bars.y Source code
plotB Man page Source code
plotBackVar Man page Source code
plotDiffNoise Man page Source code
plotExpNoise Man page Source code
plotLoess Source code
plotMV Man page Source code
plotNoiseModel Man page Source code
plotPC Man page Source code
plotPP Man page Source code
plotPT Man page Source code
plotPearsonRes Man page Source code
plotQQ Man page Source code
plotQuantMap Man page Source code
plotRegNB Man page Source code
plotTrProbs Man page Source code
plotUMINoise Man page Source code
plotbackground Man page Source code
plotdiffgenes Man page Source code
plotdiffgenesnb Man page Source code
plotdimsat Man page Source code
plotdistanceratio Man page Source code
plotexpmap Man page Source code
plotfeatmap Man page
plotgraph Man page Source code
plotjaccard Man page Source code
plotlabelsmap Man page Source code
plotlinkpv Man page Source code
plotlinkscore Man page Source code
plotmap Man page Source code
plotmarkergenes Man page Source code
plotoutlierprobs Man page Source code
plotsaturation Man page Source code
plotsensitivity Man page Source code
plotsilhouette Man page Source code
plotspantree Man page Source code
plotsymbolsmap Man page Source code
postfntb Man page Source code
priorfn Man page Source code
projback Man page Source code
projcells Man page Source code
projenrichment Man page Source code
pruneKnn Man page Source code
pseudoTime Man page Source code
quantKnn Man page Source code
rcpp_hello_world Man page Source code
rfcorrect Man page Source code
smoothPar Source code
testPrior Man page Source code
transitionProbs Man page Source code
updateSC Man page Source code
uvar Source code
varRegression Man page Source code
violinMarkerPlot Man page Source code
zsc_med Source code
zscore Source code
RaceID documentation built on Sept. 28, 2023, 5:06 p.m.

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