plotNoiseModel: Function for plotting the baseline model of gene expression...

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Function for plotting the baseline model of gene expression variability

Description

This function plots the variance against mean expression across all genes and a second order polynomial to the base line of the variance-mean dependence in log space.

Usage

plotNoiseModel(x, corrected = FALSE)

Arguments

x	List object returned by function noiseBaseFit or function compNoise.
corrected	logical value. If TRUE, then the variance is plotted after regressing our the mean dependence.

Value

None

Examples

x <- noiseBaseFit(intestinalDataSmall,step=.01,thr=.05)
plotNoiseModel(x)

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.