plotsaturation: Plot Saturation of Within-Cluster Dispersion

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Plot Saturation of Within-Cluster Dispersion

Description

This functions plots the (change in the) mean within-cluster dispersion as a function of the cluster number and highlights the saturation point inferred based on the saturation criterion applied by RaceID3: The number of clusters where the change in within-cluster dispersion upon adding further clusters approaches linear behaviour demarcates the saturation point and is highlighted in blue.

Usage

plotsaturation(object, disp = FALSE)

Arguments

object	SCseq class object.
disp	logical. If FALSE, then the change of the within-cluster dispersion is plotted. if TRUE the actual dispersion is plotted. Default is FALSE

Value

None

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.