plotlabelsmap: Plot labels in a dimensional reduction representation

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Plot labels in a dimensional reduction representation

Description

This functions plots cell labels into a two-dimensional t-SNE map, UMAP, or a Fruchterman-Rheingold graph layout of the singe-cell transcriptome data.

Usage

plotlabelsmap(object, labels = NULL, fr = FALSE, um = FALSE, cex = 0.5)

Arguments

object	SCseq class object.
labels	Vector of labels for all cells to be highlighted in the t-SNE map. The order has to be the same as for the columns in slot ndata of the SCseq object. Default is NULL and cell names are highlighted.
fr	logical. If TRUE then plot Fruchterman-Rheingold layout. Default is FALSE.
um	logical. If TRUE then plot umap dimensional reduction representation. Default is FALSE.
cex	positive real number. Size of the labels. Default is 0.5.

Value

None

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.