plotExpNoise: Noise-expression scatter plot

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Noise-expression scatter plot

Description

Plotting noise (epsilon) as a function of normalized or non-normalized expression for a given gene.

Usage

plotExpNoise(g, object, noise, set = NULL, ps = 0.1, norm = TRUE, ...)

Arguments

g	Valid gene ID with available expression and noise estimates.
object	RaceID SCseq object.
noise	List object returned by the compTBNoise function.
set	Set of valid cluster numbers. Default is NULL and data are plotted for cells from all clusters.
ps	Real number. Pseudo-count added to noise and expression estimates. Default is 0.1.
norm	logical. If FALSE, then noise is plotted versus non-normalized expression. Default is TRUE and noise is plotted against normalized expression.
...	Additional arguments of plot function.

Value

None.

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.