plotQQ: Scatter plot of two noise-related quantaties of local pruned...

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Scatter plot of two noise-related quantaties of local pruned k-nearest neighbourhoods

Description

Displaying two noise-related quantaties of local pruned k-nearest neighbourhoods in a scatterplot highlighting VarID clusters.

Usage

plotQQ(x, m, n, object, cluster = NULL, cex = 0.5, show.cor = TRUE, ...)

Arguments

x	List object returned by quantKnn function.
m	Component name of x. One of "noise.av", "noise.ratio", "local.corr", "umi".
n	Component name of x. One of "noise.av", "noise.ratio", "local.corr", "umi".
object	SCseq class object.
cluster	Valid cluster number or vector of cluster numbers, contained in object@cpart. If given, then cells of clusters in cluster are circled in black.
cex	Real positive number. Size of data points. Default is 0.5.
show.cor	logical. If TRUE then Pearson's correlation is shown in the legend. Default is TRUE.
...	Additional parameters of plot (e.g., log, see help(plot)).

Value

None

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.