plotdimsat: Plotting the Saturation of Explained Variance

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Plotting the Saturation of Explained Variance

Description

This functions plots the explained variance as a function of PCA/ICA components computed by the function CCcorrect. The number of components where the change in explained variability upon adding further components approaches linear behaviour demarcates the saturation point and is highlighted in blue.

Usage

plotdimsat(object, change = TRUE, lim = NULL)

Arguments

object	SCseq class object.
change	logical. If TRUE then the change in explained variance is plotted. Default is FALSE and the explained variance is shown.
lim	Number of components included for he calculation and shown in the plot. Default is NULL and all components are included.

Value

None

RaceID documentation built on April 4, 2025, 4:34 a.m.