plotPT: Plotting pseudo-time in dimensional reduction representation

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Plotting pseudo-time in dimensional reduction representation

Description

Highlight clusters or pseudotime in dimensional reduction representation and indicate trajectory derived by slingshot.

Usage

plotPT(pt, object, clusters = TRUE, lineages = FALSE)

Arguments

pt	List object returned by function pseudoTime.
object	RaceID SCseq object.
clusters	logical. If TRUE, then clusters are highlighted. Otherwise, pseudotime is highlighted. Default is TRUE.
lineages	logical. If TRUE, then lineages as linear connections of clusters are hghlighted. Otherwise, continuous trajectories are shown. Default is FALSE.

Value

None

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.