plotdiffgenes: Barplot of differentially expressed genes

In RaceID: Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data

Barplot of differentially expressed genes

Description

This functions produces a barplot of differentially expressed genes derived by the function diffgenes

Usage

plotdiffgenes(z, gene)

Arguments

z	Output of diffgenes
gene	Valid gene name. Has to correspond to one of the rownames of the ndata slot of the SCseq object.

Value

None

Examples

sc <- SCseq(intestinalDataSmall)
sc <- filterdata(sc)
sc <- compdist(sc)
sc <- clustexp(sc)
sc <- findoutliers(sc)
x <- diffgenes(sc,1,2)
head(x$z)
plotdiffgenes(x,names(x$z)[1])

RaceID documentation built on Sept. 28, 2023, 5:06 p.m.