Files in Racmacs
Antigenic Cartography Macros

MD5

NAMESPACE

DESCRIPTION

R/RcppExports.R R/map_diagnostics_leverage.R R/rac_process_titers.R R/map_viewer.R R/map_info_long.R R/shiny_optimize.R R/map_point_coords.R R/shiny_diagnostics.R R/map_props_points_antigens.R R/map_props_optimizations.R R/shiny_server.R R/utils_plotting.R R/map_edit_names.R R/utils_blobs.R R/utils_messages.R R/shiny_utils.R R/shiny_gadget.R R/shiny_load.R R/RacViewer.R R/utils_progress.R R/map_merge_report.R R/map_optimize.R R/map_blobs.R R/utils_matrix_getters.R R/map_loadsave.R R/map_merge.R R/acmacs_placeAbvs.R R/map_props.R R/utils_r3js.R R/utils_rotation.R R/map_point_matching.R R/map_diagnostics_dimtest.R R/map_methods.R R/map_ggplot.R R/map_subset.R R/utils_tests.R R/rac_blobs.R R/map_reactivity_adjusts.R R/utils_geometry.R R/utils_type_checking.R R/map_transformation.R R/map_optimize_reactivity.R R/map_plot.R R/map_procrustes.R R/utils_documentation.R R/map_stress.R R/map_plotspec.R R/map_props_diagnostics.R R/GUImini.R R/map_diagnostics_bootstrap_blobs.R R/GUI.R R/rac_normaliseNames.R R/map_diagnostics_triangulation_blobs.R R/shiny_save.R R/map_optimizations.R R/shiny_relax.R R/map_props_points_sera.R R/map_legend.R R/Racmacs-package.R R/map_diagnostics_bootstrap.R R/map_props_plotspec.R R/map_new.R R/shiny_optimizations.R R/plot_diagnostics.R R/shiny_ui.R R/map_sequences.R

src/ac_matching.cpp

src/ac_bootstrap.cpp

src/Makevars.win

src/acmap_plotspec.h

src/Makevars

src/utils_transformation.cpp

src/ac_move_trapped_points.cpp

src/utils_transformation.h

src/ac_errorlines.h

src/Racmacs_wrappers_antigens.cpp

src/ac_stress.cpp

src/acmap_diagnostics.h

src/acmap_point.h

src/json_read_to_acmap.h

src/ac_matching.h

src/RcppExports.cpp

src/json_read_to_acmap.cpp

src/json_write_from_acmap.h

src/procrustes.h

src/acmap_optimization.cpp

src/ac_optimization.h

src/ac_merge.cpp

src/acmap_map.h

src/ac_optim_map_stress.cpp

src/ac_utils.cpp

src/ac_titers.cpp

src/ac_errorlines.cpp

src/utils_interpolation.cpp

src/json_assert.cpp

src/ac_hemi_test.cpp

src/ac_coords_stress.h

src/ac_optim_map_stress.h

src/Racmacs_wrappers.cpp

src/utils_progress.h

src/utils_euc_dist.cpp

src/acmap_point.cpp

src/ac_stress_blobs.cpp

src/utils_error.h

src/utils_geometry.cpp

src/acmap_optimization.h

src/Racmacs_wrappers_optimizations.cpp

src/ac_optimizer_options.h

src/ac_hemi_test.h

src/ac_bootstrap.h

src/utils.cpp

src/procrustes.cpp

src/ac_titers.h

src/Racmacs_wrappers_plotspec.cpp

src/json_write_from_acmap.cpp

src/json_assert.h

src/utils_error.cpp

src/ac_stress_blobs.h

src/utils.h

src/ac_relax_coords.h

src/acmap_sequences.h

src/ac_merge.h

src/ac_dimension_test.cpp

src/ac_optimization.cpp

src/ac_dimension_test.h

src/acmap_titers.h

src/ac_bootstrap_output.h

src/ac_stress.h

src/ac_optimize_ag_reactivity.cpp

src/acmap_map.cpp

src/acmap_titers.cpp

src/Racmacs_types.h

src/Racmacs_wrappers_sera.cpp

inst/WORDLIST

inst/doc/customising-map-appearance.R

inst/doc/making-a-map-from-scratch.html

inst/doc/customising-map-appearance.html

inst/doc/assessing_map_uncertainty.R inst/doc/merging-maps.R inst/doc/making-a-map-from-scratch.Rmd inst/doc/merging-maps.Rmd

inst/doc/assessing_map_uncertainty.html

inst/doc/comparing-maps.R inst/doc/customising-map-appearance.Rmd inst/doc/making-a-map-from-scratch.R inst/doc/assessing_map_uncertainty.Rmd inst/doc/comparing-maps.Rmd

inst/doc/comparing-maps.html

inst/doc/adding-sequences.Rmd inst/doc/adding-sequences.R

inst/doc/merging-maps.html

inst/doc/adding-sequences.html

inst/extdata/h3map2004_sequences_ag.csv

inst/extdata/h3map2004_sequences_sr.csv

inst/extdata/h3map2004_hitable.csv

inst/extdata/ferret_ag_dictionary.csv

inst/extdata/h3map2004.ace

inst/extdata/h3map2004_subset.ace

inst/extdata/icons/buttons/sequences.svg

inst/extdata/icons/buttons/view-table.svg

inst/extdata/icons/buttons/controls.svg

inst/shinyapps/RacmacsGUI/app.R

inst/shinyapps/RacmacsGUI/www/browser.css

inst/shinyapps/RacmacsGUI/www/racmacs.js

inst/shinyapps/RacmacsGUI/www/filter.css

inst/shinyapps/RacmacsGUI/www/gui_title.png

inst/shinyapps/RacmacsGUI/www/racmacs.css

inst/shinyapps/RacmacsGUI/www/acorg_logo.png

inst/shinyapps/RacmacsGUI/tests/testthat.R

inst/shinyapps/RacmacsGUI/tests/testdata/testmap.ace

inst/shinyapps/RacmacsGUI/tests/testthat/test-server.R inst/templates/diagnostics_page.Rmd

inst/htmlwidgets/RacViewer.yaml

inst/htmlwidgets/RacViewer.js

inst/htmlwidgets/RacViewer/tests/test.js

inst/htmlwidgets/RacViewer/lib/init.js

inst/htmlwidgets/RacViewer/lib/textures/sprites/sprites.afdesign

inst/htmlwidgets/RacViewer/lib/textures/sprites/circle2.png

inst/htmlwidgets/RacViewer/lib/textures/sprites/circle.png

inst/htmlwidgets/RacViewer/lib/textures/sprites/ring.png

inst/htmlwidgets/RacViewer/lib/textures/sprites/ball.png

inst/htmlwidgets/RacViewer/lib/textures/sprites/disc.png

inst/htmlwidgets/RacViewer/lib/styles/browser.css

inst/htmlwidgets/RacViewer/lib/styles/procrustes.css

inst/htmlwidgets/RacViewer/lib/styles/diagnostics.css

inst/htmlwidgets/RacViewer/lib/styles/load.css

inst/htmlwidgets/RacViewer/lib/styles/checkbox.css

inst/htmlwidgets/RacViewer/lib/styles/controlpanel.css

inst/htmlwidgets/RacViewer/lib/styles/drag.css

inst/htmlwidgets/RacViewer/lib/styles/projections.css

inst/htmlwidgets/RacViewer/lib/styles/hitable.css

inst/htmlwidgets/RacViewer/lib/styles/racViewer.css

inst/htmlwidgets/RacViewer/lib/styles/blobs.css

inst/htmlwidgets/RacViewer/lib/jscolor/jscolor.min.js

inst/htmlwidgets/RacViewer/lib/functions/connections.js

inst/htmlwidgets/RacViewer/lib/functions/sequences.js

inst/htmlwidgets/RacViewer/lib/functions/bootstrap.js

inst/htmlwidgets/RacViewer/lib/functions/points.js

inst/htmlwidgets/RacViewer/lib/functions/save.js

inst/htmlwidgets/RacViewer/lib/functions/animation.js

inst/htmlwidgets/RacViewer/lib/functions/api.js

inst/htmlwidgets/RacViewer/lib/functions/procrustes.js

inst/htmlwidgets/RacViewer/lib/functions/optimization.js

inst/htmlwidgets/RacViewer/lib/functions/controls.js

inst/htmlwidgets/RacViewer/lib/functions/dimensions.js

inst/htmlwidgets/RacViewer/lib/functions/icons.js

inst/htmlwidgets/RacViewer/lib/functions/projections.js

inst/htmlwidgets/RacViewer/lib/functions/agreactivity.js

inst/htmlwidgets/RacViewer/lib/functions/blobs.js

inst/htmlwidgets/RacViewer/lib/functions/selections.js

inst/htmlwidgets/RacViewer/lib/functions/stress.js

inst/htmlwidgets/RacViewer/lib/functions/hemisphering.js

inst/htmlwidgets/RacViewer/lib/functions/graphics.js

inst/htmlwidgets/RacViewer/lib/functions/elements.js

inst/htmlwidgets/RacViewer/lib/functions/table.js

inst/htmlwidgets/RacViewer/lib/functions/agsr.js

inst/htmlwidgets/RacViewer/lib/functions/browser.js

inst/htmlwidgets/RacViewer/lib/functions/diagnostics.js

inst/htmlwidgets/RacViewer/lib/functions/grid.js

inst/htmlwidgets/RacViewer/lib/functions/buttons.js

inst/htmlwidgets/RacViewer/lib/functions/drag.js

inst/htmlwidgets/RacViewer/lib/functions/shortcuts.js

inst/htmlwidgets/RacViewer/lib/functions/legend.js

inst/htmlwidgets/RacViewer/lib/functions/data.js

inst/htmlwidgets/RacViewer/lib/functions/load.js

inst/htmlwidgets/RacViewer/lib/functions/utils.js

inst/htmlwidgets/RacViewer/lib/functions/filters.js

inst/htmlwidgets/RacViewer/lib/optimization/optimization.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/init.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/styles/r3js.css

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/three.min.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/LICENSE

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/renderers/CSS3DRenderer.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/renderers/SVGRenderer.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/renderers/CSS2DRenderer_r3js.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/renderers/CSS2DRenderer.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/renderers/Projector.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/renderers/CSS2DRenderer_r3js_old.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/lines/Wireframe.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/lines/LineSegmentsGeometry.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/lines/LineGeometry.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/lines/WireframeGeometry2.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/lines/LineMaterial.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/lines/LineSegments2.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/lines/Line2.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/plugins/THREE.MeshLine.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/plugins/PLYExporter.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/plugins/Detector.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/plugins/GLTFExporter.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/plugins/ColladaLoader.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/fonts/helvetiker_regular.typeface.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/utils/BufferGeometryUtils.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/threejs/utils/SceneUtils.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/plotting.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/renderer.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/api.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_arrow.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/toggle.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/icons.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_triangles.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/scene.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_polygon.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_lines.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/shaders.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/selection.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/dynamic.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_light.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/navigation.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/highlight.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_gllines.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_text.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/colors.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_points.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/buttons.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_glarrow.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_sphere.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_surface.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_glpoints.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/camera.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/legend.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/save_img.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/viewport.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/events.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/sprites.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/load.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/raytrace.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/utils.js

inst/htmlwidgets/RacViewer/lib/r3js/lib/functions/element_grid.js

build/vignette.rds

tests/testthat.R

tests/testdata/test_mergemap2.ace

tests/testdata/testmap_small.ace

tests/testdata/test_mergemap3.ace

tests/testdata/testmap_merge.ace

tests/testdata/testmap_h3subset.ace

tests/testdata/testmap_large.ace

tests/testdata/testmap.ace

tests/testdata/test_mergemap1.ace

tests/testdata/testmap_h3subset3d_1000bootstraps.ace

tests/testdata/testmap_h3subset_srsequences.csv

tests/testdata/testmap_h3subset3d.ace

tests/testdata/testmap_h3subset_sequences.csv

tests/testdata/titer_tables/titer_table3_asterisk.csv

tests/testdata/titer_tables/titer_table4_blank.csv

tests/testdata/titer_tables/titer_table1.RData

tests/testdata/titer_tables/titer_table1.csv

tests/testdata/titer_tables/titer_table5_underconstrained.csv

tests/testdata/titer_tables/titer_table1.xlsx

tests/testdata/titer_tables/titer_table4.RData

tests/testdata/titer_tables/titer_table2.txt

tests/testdata/titer_tables/titer_table3.RData

tests/testdata/titer_tables/titer_table2.RData

man/figures/lifecycle-stable.svg

man/figures/lifecycle-superseded.svg

man/figures/logo.png

man/figures/lifecycle-questioning.svg

man/figures/lifecycle-archived.svg

man/figures/lifecycle-defunct.svg

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-deprecated.svg

man/figures/lifecycle-maturing.svg

Racmacs documentation built on June 22, 2024, 11:33 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Racmacs
Antigenic Cartography Macros

Files in Racmacs
Antigenic Cartography Macros

R Package Documentation

Browse R Packages

We want your feedback!

Racmacs Antigenic Cartography Macros

Files in Racmacs Antigenic Cartography Macros

R Package Documentation

Browse R Packages

We want your feedback!

Racmacs
Antigenic Cartography Macros

Files in Racmacs
Antigenic Cartography Macros