dot-tm_run: Run the tasks and reassemble one profile

In TmCalculator: Genome-Wide Nucleic Acid Melting Temperature Profiling and Multi-Omics Integration

Run the tasks and reassemble one profile

Description

Each task opens the source itself, so what crosses between processes is a name and a coordinate pair rather than any sequence. That is what makes parallelism pay here, and why an in-memory source is staged to a file first rather than sent over a socket.

Usage

.tm_run(tasks, src, window, slide, model, BPPARAM, keep_sequence, verbose)

Arguments

tasks	From .tm_tasks.
src	A source from .tm_source.
window, slide	Tiling; NULL window means one window per region.
model	Model arguments to hand to tm_calculate.
BPPARAM	A BiocParallelParam, or NULL for this process.
keep_sequence	Keep the sequence columns in the result.
verbose	Report task and window counts.

Value

A GRanges in source order.

TmCalculator documentation built on Oct. 5, 2026, 5:08 p.m.