makeSkyline: get values for Bayesian Skyline plot

In dowser: B Cell Receptor Phylogenetics Toolkit

get values for Bayesian Skyline plot

Description

makeSkyline

Usage

makeSkyline(
  object,
  bins = 100,
  youngest = 0,
  clone_id = NULL,
  max_height = c("min", "median", "mean", "max"),
  exclude_germline = TRUE
)

Arguments

object	treedata object with parameters_posterior and trees_posterior
bins	number of bins for plotting
youngest	timepoint of the most recently tip sampled (if 0, backward time used)
clone_id	name of the clone being analyzed (if desired)
max_height	max height to use (min, median, mean, max)
exclude_germline	exclude germline from skyline plot? (For TyCHE germline-rooted trees)

Value

Bayesian Skyline values for given clone

dowser documentation built on Aug. 20, 2026, 5:06 p.m.