makeSkyline: get values for Bayesian Skyline plot

In dowser: B Cell Receptor Phylogenetics Toolkit

get values for Bayesian Skyline plot

Description

makeSkyline

Usage

makeSkyline(
  logfile,
  treesfile,
  burnin,
  bins = 100,
  youngest = 0,
  clone_id = NULL,
  max_height = c("min", "median", "mean", "max")
)

Arguments

logfile	Beast log file
treesfile	BEAST trees file
burnin	Burnin percentage (1-100)
bins	number of bins for plotting
youngest	timepoint of the most recently tip sampled (if 0, backward time used)
clone_id	name of the clone being analyzed (if desired)
max_height	max height to use (min, median, mean, max)

Value

Bayesian Skyline values for given clone

dowser documentation built on Nov. 5, 2025, 6:36 p.m.