plotSkylines: Simple function for plotting Bayesian skyline plots
In dowser: B Cell Receptor Phylogenetics Toolkit

View source: R/Plotting.R

plotSkylines

R Documentation

Simple function for plotting Bayesian skyline plots

Description

plotSkylines Simple Bayesian skyline plots

Usage

plotSkylines(clones, file = NULL, width = 8.5, height = 11, ...)

Arguments

`clones`	output from getTrees using BEAST
`file`	pdf file name for printing plots
`width`	width of plot in inches if file specified
`height`	height of plot in inches if file specified
`...`	optional arguments passed to grDevices::pdf

Value

if no file specified, a list of ggplot objects. If file specified will plot to specified file

See Also

getSkylines readBEAST getTrees

dowser documentation built on Nov. 5, 2025, 6:36 p.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Using data from non-B cells

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