stopCodonCheck: Check whether sequences have in-frame premature stop codons...
In dowser: B Cell Receptor Phylogenetics Toolkit

View source: R/Clones.R

stopCodonCheck

R Documentation

Check whether sequences have in-frame premature stop codons (PTCs)

Description

Check whether sequences have in-frame premature stop codons (PTCs)

Usage

stopCodonCheck(sequences, nproc = 1, check = TRUE)

Arguments

`sequences`	Vector of nucleotide sequences in desired reading frame
`nproc`	Number of cores for preprocessing
`check`	Check whether codons split correctly

Value

Boolean vector of whether each sequence has an in-frame PTC

dowser documentation built on Nov. 5, 2025, 6:36 p.m.

dowser index

Package overview README.md Building trees with paired heavy and light chain data Build Lineage Trees Build Time Trees Using TyCHE and BEAST Discrete Trait Analysis Measurable evolution Plotting Lineage Trees Quickstart Reconstruct Clonal Germlines Reconstruct Intermediate Sequences Build B cell lineage trees Building trees with paired heavy and light chain data Build Time Trees Using TyCHE and BEAST Detect ongoing B cell evolution Discrete trait analysis Dowser: Simple lineage tree construction Plot B cell lineage trees Reconstruct clonal germline sequences Reconstruct intermediate sequences Using data from non-B cells

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