Files in flowr
Streamlining Design and Deployment of Complex Workflows
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/to-flowdef.R
R/submit-local.R
R/zz-parse-resources.R
R/zz-create-jobs-mat.R
R/check.R
R/zz-flow-code.R
R/parse-jobids.R
R/kill-flow.R
R/class-def.R
R/zz-db.R
R/status.R
R/to-flowdet.R
R/to-flow.R
R/generic.R
R/verbose.R
R/check-args.R
R/conf.R
R/to-flowmat.R
R/render-dependency.R
R/limit_runs.R
R/run_pipe_v2.R
R/plot.R
R/rw-flow-details.R
R/rerun.R
R/run.R
R/zz-test-queue.R
R/zz-examples.R
R/submit-flow.R
R/zzz.R
R/setup.R
R/submit-job.R
R/fetch.r
R/errors.R
inst/CITATION
inst/doc/flowr_install.html
inst/doc/flowr_overview.R
inst/doc/flowr_tutorial.html
inst/doc/flowr_install.Rmd
inst/doc/flowr_overview.html
inst/doc/flowr_overview.Rmd
inst/doc/flowr_install.R
inst/doc/flowr_tutorial.Rmd
inst/doc/flowr_tutorial.R
inst/conf/flowr.conf
inst/conf/lsf.sh
inst/conf/sge.sh
inst/conf/torque_comm.sh
inst/conf/slurm.sh
inst/conf/torque.sh
inst/conf/moab.sh
inst/conf/local.sh
inst/conf/test.sh
inst/pipelines/abcd.tsv
inst/pipelines/fastq_bam_bwa.def
inst/pipelines/README.md
inst/pipelines/sleep_pipe.pdf
inst/pipelines/fastq_bam_bwa.R
inst/pipelines/sleep_pipe.def
inst/pipelines/abcd.def
inst/pipelines/sleep_pipe.tsv
inst/pipelines/fastq_bam_bwa.conf
inst/pipelines/sleep_pipe.R
inst/scripts/check_file_status.sh
inst/scripts/flowr.v1
inst/scripts/flowr
build/vignette.rds
tests/testthat.R
tests/README.md
tests/testthat/test-cases.R
tests/testthat/test-plots.R
tests/testthat/test-checkargs.R
tests/testthat/test-toflow.R
vignettes/flowr_install.Rmd
vignettes/flowr_overview.Rmd
vignettes/flowr_tutorial.Rmd
vignettes/flowr_tutorial_files/figure-html/plot_tweaked_def-1.png
vignettes/flowr_tutorial_files/figure-html/plot_skeleton_def-1.png
vignettes/files/logo_blue.png
vignettes/files/platforms_supported.txt
vignettes/files/logo_red.png
vignettes/files/googl.js
vignettes/files/toy.png
vignettes/files/logo.png
vignettes/files/logo_green.png
vignettes/files/flow_def_columns.txt
vignettes/files/logo_black.png
vignettes/flowr_overview_files/figure-html/plot_abcd-1.png
vignettes/flowr_overview_files/figure-html/plot_one_one-1.png
vignettes/flowr_overview_files/figure-html/plotit-1.png
man/run.Rd
man/setup.Rd
man/check.Rd
man/fetch.Rd
man/get_unique_id.Rd
man/whisker_render.Rd
man/to_flowdef.Rd
man/queue.Rd
man/get_resources_lsf.Rd
man/to_df.status.Rd
man/to_flowmat.Rd
man/test_queue.Rd
man/verbose.Rd
man/submit_job.Rd
man/plot_flow.Rd
man/replace_slots.Rd
man/create_jobs_mat.Rd
man/kill.Rd
man/flow.Rd
man/get_resources.Rd
man/write_flow_details.Rd
man/submit_flow.Rd
man/generate_flow_code.Rd
man/run_pipe_v2.Rd
man/rerun.Rd
man/status.Rd
man/job.Rd
man/to_flow.Rd
man/error.Rd
man/to_flowdet.Rd
man/get_wds.Rd
man/flowopts.Rd
man/check_args.Rd
man/submit_run.Rd
