API for idiogramFISH
Shiny App. Idiograms with Marks and Karyotype Indices
| Global functions | |
|---|---|
| .onAttach | Source code |
| OTUlabelsright | Source code |
| `%W>%` | Source code |
| addAttributesDfChrSize | Man page Source code |
| addAttributesDfChrSizeSimple | Source code |
| addChrNameAttrMark | Source code |
| addChrNameAttrMarkDots | Source code |
| addChrSizeColumn | Source code |
| addNeworderColumn | Source code Source code |
| addNotes | Man page Source code |
| addOTUnames | Source code |
| allChrSizeSample | Man page |
| allMarksSample | Man page |
| applyMapCircle | Source code |
| armRatioCI | Man page Source code |
| arrowPlotMark | Man page Source code |
| asymmetry | Man page Source code |
| asymmetryA2 | Man page Source code |
| bigdfChrSizeHolo | Man page |
| bigdfMarkPosHolo | Man page |
| bigdfMarkPosHolo2 | Man page |
| bigdfOfChrSize | Man page |
| bigdfOfChrSize3Mb | Man page |
| bigdfOfMarks | Man page |
| bigdfOfMarks3Mb | Man page |
| blanks2 | Source code |
| blanks3 | Source code |
| cMPlotMark | Man page Source code |
| centerMarkMapPer | Source code |
| checkArmHolocenError | Man page Source code |
| checkNameChrDfMarks | Man page Source code |
| chrbasicdataHolo | Man page |
| chrbasicdatamono | Man page |
| chrtSqMark | Source code |
| circLabelMark | Source code |
| circPlotDots | Source code |
| citrusMarkPos | Man page Source code |
| citrusSize | Man page Source code |
| customCeiling | Man page Source code |
| dfAlloParentMarks | Man page |
| dfAlloParentMarksHolo | Man page |
| dfChrSizeHolo | Man page |
| dfMarkColor | Man page |
| dfMarkColor5S25S | Man page |
| dfMarkColorIn | Man page |
| dfMarkPosHolo | Man page |
| dfMarkStyle | Man page |
| dfOfChrSize | Man page |
| dfOfMarks | Man page |
| dfOfMarks2 | Man page |
| dfToListColumn | Man page Source code |
| drawCen | Source code |
| drawCenMarks | Source code |
| drawCenStyle | Source code |
| drawPlot | Source code |
| drawPlotMark | Source code |
| drawPlotMarkLine | Source code |
| error | Source code Source code Source code Source code Source code Source code Source code Source code Source code |
| fillMarkInfo | Man page Source code |
| fillMarkInfo2 | Man page Source code |
| filterExtraOTU | Man page Source code |
| filter_colors | Source code |
| fixChrNameDupDF | Man page Source code |
| formatFs | Source code |
| genBankReadIF | Man page Source code |
| humChr | Man page |
| humMarkColor | Man page |
| humMarkPos | Man page |
| idiogramFISH | Man page |
| idiogramFISH-package | Man page |
| insertInList | Man page Source code |
| intercalate | Source code |
| make.uniqueIF | Man page Source code |
| makeCharCols | Source code |
| makeNumCols | Man page Source code |
| makeRoundCoordXY | Source code |
| makeVectorNames | Man page Source code |
| makedfMarkColor | Man page Source code |
| makedfMarkColorMycolors | Man page Source code |
| mapChrCenter | Source code |
| mapCircle | Source code |
| mapGGChr | Man page Source code |
| mapGGChrMark | Man page Source code |
| mapOTUnames | Source code |
| mapRadius | Source code |
| mapXY | Man page Source code |
| mapXYCen | Source code |
| mapXYCenLines | Source code |
| mapXYCenMimic | Man page Source code |
| mapXYCenMimicInside | Source code |
| mapXYchromatidHolo | Source code |
| mapXYchromatidHoloRo | Source code |
| mapXYchromatidLA | Source code |
| mapXYchromatidLARo | Source code |
| mapXYchromatidSA | Source code |
| mapXYchromatidSARo | Source code |
| mapXYmarksRo | Source code |
| mapxyRoundCenLines | Source code |
| markDistCenGISHfix | Man page Source code |
| markMapPer | Source code |
| markMapPerCen | Source code |
| markMapPerDots | Source code |
| markMapPercM | Source code |
| markOverCMA | Man page Source code |
| markdataholo | Man page |
| markposDFs | Man page |
| mimicCenPlotMark | Man page Source code |
| mimicCenPlotMarkInside | Source code |
| mydfMaColor | Man page |
| namesToColumns | Man page Source code |
| newOrderColumn | Man page Source code |
| oneDot | Source code |
| parentalAndHybChrSize | Man page |
| parentalAndHybHoloChrSize | Man page |
| perMark | Man page Source code |
| plotChrNames | Source code |
| plotDotMarks | Man page Source code |
| plotIdiograms | Man page Source code |
| plotSqMarks | Man page Source code |
| plotchrtds | Source code |
| plotlabelsright | Man page Source code |
| posCalc | Man page Source code |
| processNameVar | Source code |
| processNameVarAndFormula | Source code |
| psum | Source code |
| radDotsPer | Source code |
| removeNAFromList | Man page Source code |
| robert | Man page Source code |
| roundMe | Source code |
| rulerPlot | Man page Source code |
| rulerTitle | Man page Source code |
| runBoard | Man page Source code |
| sqPlotMarkCP | Source code |
| swapChrRegionDfSizeAndMarks | Man page Source code |
| textLabel | Man page Source code |
| textLabelCen | Source code |
| textLabelDots | Man page Source code |
| textLabelLeft_Dep | Source code |
| transRadDots | Source code |
| transYList | Source code |
| transyListCen | Source code |
| transyListMark | Source code |
| transyListMarkDots | Source code |
| traspaMarks | Man page |
| traspadf | Man page |
| xChrtdMap | Source code |
| xChrtdMarkMap | Source code |
| xHortoVer | Source code |
| xHortoVerDots | Source code |
| xHortoVerMid | Source code |
| xHortoVerRoundCen | Source code |
| xHortoVerRoundCenExt | Source code |
| xMarkMap | Source code |
| xMarkMapLeft | Source code |
| yVertoHor | Man page Source code |
