Files in misha
Toolkit for Analysis of Genomic Data

MD5

NAMESPACE

DESCRIPTION

LICENSE

R/track-var.R R/db.R R/misha-package.R R/utils-pipe.R R/compute.R R/ftp.R R/track.R R/vtrack.R R/track-2d.R R/intervals.R R/zzz.R R/track-attr.R R/track-array.R R/utils.R

src/GenomeTrackFixedBin.cpp

src/GenomeTrackExtract.cpp

src/GenomeTrackSparse.cpp

src/DnaPSSM.h

src/Random.h

src/TGLException.h

src/GIntervalsSet.h

src/GInterval.cpp

src/TrackExpressionTrackRectsIterator.cpp

src/rdbutils.h

src/GenomeTrack2DCreate.cpp

src/TrackExpressionSparseIterator.h

src/TrackExpressionBigSet2DIterator.h

src/Computer2D.h

src/Makevars

src/SegmentFinder.h

src/StreamSampler.h

src/GenomeTrackComputed.cpp

src/PssmSet.cpp

src/BinsManager.cpp

src/port.h

src/GenomeTrackFixedBin.h

src/TrackExpressionBigSet1DIterator.cpp

src/TrackExpressionCartesianGridIterator.h

src/GIntervalsSet2D.h

src/TrackExpressionScanner.h

src/GIntervalsMeta2D.h

src/GTrackIntervalsFetcher.h

src/GenomeChromKey.h

src/GenomeTrackBinnedTransform.cpp

src/GenomeTrack1D.h

src/GIntervals.h

src/StatQuadTreeCached.h

src/GenomeTrackImportMappedseq.cpp

src/GenomeCreatePwmEnergy.cpp

src/rdbinterval.h

src/TGLException.cpp

src/GenomeTrackArrays.h

src/TrackExpressionVars.cpp

src/GenomeTrackComputed.h

src/BufferedFile.h

src/TrackExpressionIntervals1DIterator.cpp

src/GenomeTrackArrayImport.cpp

src/TrackExpressionFixedBinIterator.h

src/GenomeUtils.h

src/util.h

src/TrackExpressionFixedBinIterator.cpp

src/StatQuadTreeCachedSerializer.h

src/GIntervalsBigSet2D.h

src/GenomeTrackArrays.cpp

src/rdbutils.cpp

src/System.h

src/GenomeSeqRead.cpp

src/GenomeTrackSmooth.cpp

src/misha-init.cpp

src/GInterval2D.cpp

src/GenomeTrackDistribution.cpp

src/GenomeIteratorIntervals.cpp

src/GenomeTrackFindNeighbors.cpp

src/TrackExpressionIntervals2DIterator.h

src/GTrackLiftover.cpp

src/TrackExpressionIntervals1DIterator.h

src/TrackExpressionBigSet1DIterator.h

src/TrackExpressionIterator.h

src/GenomeTrackPartition.cpp

src/GIntervals2D.cpp

src/Segment.h

src/GIntervalsFetcher1D.h

src/GenomeCisDecay.cpp

src/TrackExpressionFixedRectIterator.h

src/TrackExpressionBigSet2DIterator.cpp

src/GIntervalsMeta1D.cpp

src/BinFinder.cpp

src/GIntervalsFetcher1D.cpp

src/GIntervalsBigSet1D.h

src/HashFunc.h

src/DnaPSSM.cpp

src/GenomeTrackSegmentation.cpp

src/GenomeSeqImport.cpp

src/Rectangle.h

src/strutil.cpp

src/GenomeTrackQuantiles.cpp

src/PssmSet.h

src/GenomeTrackSparse.h

src/RandomShuffle.h

src/GIntervalsFetcher2D.h

src/GenomeTrackConvert.cpp

src/rtest.cpp

src/TrackExpressionCartesianGridIterator.cpp

src/HiCComputers.cpp

src/IntervalsImport.cpp

src/TrackExpressionVars.h

src/Point.h

src/GTrackIntervalsFetcher1D.h

src/GIntervalsMeta1D.h

src/GInterval2D.h

src/TrackExpressionFixedRectIterator.cpp

src/HiCComputers.h

src/GTrackIntervalsFetcher.cpp

src/GenomeTrackInfo.cpp

src/DiagonalBand.h

src/GenomeSeqFetch.cpp

src/GenomeTrackSummary.cpp

src/GenomeComputeStrandAutocorr.cpp

src/Thread.h

src/GIntervalsBigSet.cpp

src/IncrementalWilcox.h

src/GenomeTrack2D.h

src/GenomeTrackCreate.cpp

src/rdbprogress.h

src/GenomeTrackRects.h

src/GenomeTrackModify.cpp

src/GIntervalsMeta.h

src/GenomeTrackCreateComputer2dTest.cpp

src/GIntervalsBigSet1D.cpp

src/GenomeTrackImportWig.cpp

src/GIntervalsBigSet.h

src/GenomeSeqFetch.h

src/GenomeTrackCreateSparse.cpp

src/TrackExpressionScanner.cpp

src/GenomeUtils.cpp

src/IntervalsLiftover.cpp

src/rdbinterval.cpp

src/strutil.h

src/GenomeTrackSampler.cpp

src/rdbprogress.cpp

src/GIntervalsFetcher.h

src/config.h

src/GIntervalsMeta.cpp

src/version.cpp

src/GenomeArraysCsv.h

src/StatQuadTree.h

src/Computer2D.cpp

src/IncrementalWilcox.cpp

src/GIntervals.cpp

src/GTrackIntervalsFetcher2D.h

src/GenomeTrack.h

src/GenomeIntervalUtils.cpp

src/TrackVars.cpp

src/BinFinder.h

src/Matrix.h

src/GenomeTrackWilcox.cpp

src/BinsManager.h

src/GTrack2DImport.cpp

src/RaList.h

src/GIntervalsFetcher2D.cpp

src/Wig.h

src/GIntervalsMeta2D.cpp

src/GenomeTrackApply.cpp

src/GInterval.h

src/GenomeTrack.cpp

src/System.cpp

src/TrackExpressionIntervals2DIterator.cpp

src/TrackExpressionTrackRectsIterator.h

src/GenomeArraysCsv.cpp

src/TrackExpression2DIterator.h

src/GTrack2DImportContacts.cpp

src/GenomeTrack2D.cpp

src/Chain2Interval.cpp

src/StreamPercentiler.h

src/FindTracksNIntervals.cpp

src/GenomeTrackScreener.cpp

src/GIntervalsSetBig.h

src/TrackExpressionSparseIterator.cpp

src/GenomeTrackArrayExtract.cpp

src/GIntervals2D.h

src/GIntervalsBigSet2D.cpp

src/TrackExpressionIteratorBase.cpp

src/TrackExpressionIteratorBase.h

src/GenomeCheckVtrack.cpp

src/BufferedFile.cpp

src/Wig.cpp

inst/bigWigToWig.tar.gz

inst/WORDLIST

inst/testdb.tar.gz

inst/doc/Genomes.html

inst/doc/Genomes.Rmd inst/doc/Genomes.R inst/doc/Manual.Rmd

inst/doc/Manual.html

inst/doc/Manual.R

build/vignette.rds

exec/sgjob.sh

man/gdir.rm.Rd man/gdb.init.Rd man/gquantiles.Rd man/gdir.cwd.Rd man/gvtrack.array.slice.Rd man/gintervals.chrom_sizes.Rd man/gtrack.2d.import_contacts.Rd man/gintervals.mapply.Rd man/gcompute_strands_autocorr.Rd man/misha-package.Rd man/gintervals.neighbors.Rd man/gintervals.save.Rd man/gtrack.modify.Rd man/dot-misha.Rd man/gtrack.smooth.Rd man/gintervals.ls.Rd man/gdb.reload.Rd man/gscreen.Rd man/gtrack.attr.export.Rd man/gintervals.2d.Rd man/gcis_decay.Rd man/gvtrack.info.Rd man/gextract.Rd man/gdir.cd.Rd man/gdir.create.Rd man/giterator.cartesian_grid.Rd man/gwilcox.Rd man/gintervals.update.Rd man/gdist.Rd man/gbins.summary.Rd man/gtrack.var.set.Rd man/gintervals.load.Rd man/gdb.create.Rd man/gintervals.2d.band_intersect.Rd man/gseq.extract.Rd man/gtrack.import.Rd man/gintervals.rm.Rd man/gtrack.import_set.Rd man/gbins.quantiles.Rd man/gintervals.summary.Rd man/gtrack.create_sparse.Rd man/gvtrack.create.Rd man/gtrack.info.Rd man/gpartition.Rd man/gintervals.liftover.Rd man/giterator.intervals.Rd man/gtrack.2d.import.Rd man/gintervals.union.Rd man/glookup.Rd man/gvtrack.iterator.Rd man/gtrack.array.import.Rd man/gtrack.array.set_colnames.Rd man/gtrack.array.get_colnames.Rd man/gwget.Rd man/gintervals.exists.Rd man/gtrack.import_mappedseq.Rd man/gtrack.attr.set.Rd man/gintervals.canonic.Rd man/pipe.Rd man/gintervals.all.Rd man/gvtrack.iterator.2d.Rd man/gtrack.lookup.Rd man/gtrack.rm.Rd man/gsegment.Rd man/gintervals.rbind.Rd man/gtrack.2d.create.Rd man/gtrack.var.get.Rd man/gsample.Rd man/gcluster.run.Rd man/gsummary.Rd man/gtrack.create_pwm_energy.Rd man/gtrack.attr.import.Rd man/gvtrack.ls.Rd man/gtrack.attr.get.Rd man/gintervals.is.bigset.Rd man/gdb.get_readonly_attrs.Rd man/gintervals.load_chain.Rd man/gtrack.array.extract.Rd man/gdb.set_readonly_attrs.Rd man/gtrack.liftover.Rd man/gtrack.var.rm.Rd man/gintervals.2d.all.Rd man/gtrack.var.ls.Rd man/gintervals.diff.Rd man/gtrack.exists.Rd man/gvtrack.rm.Rd man/gtrack.create.Rd man/gtrack.create_dirs.Rd man/gintervals.quantiles.Rd man/gintervals.intersect.Rd man/gintervals.force_range.Rd man/gintervals.import_genes.Rd man/gintervals.Rd man/gtrack.ls.Rd man/gtrack.convert.Rd

misha documentation built on Sept. 14, 2023, 5:08 p.m.

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misha
Toolkit for Analysis of Genomic Data

Files in misha
Toolkit for Analysis of Genomic Data

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misha Toolkit for Analysis of Genomic Data

Files in misha Toolkit for Analysis of Genomic Data

R Package Documentation

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We want your feedback!

misha
Toolkit for Analysis of Genomic Data

Files in misha
Toolkit for Analysis of Genomic Data