is.format.msa: Check an MSA Format String
In rphast: Interface to 'PHAST' Software for Comparative Genomics
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Returns TRUE if the argument is a valid string describing a
multiple sequence alignment (MSA) format.
Usage
1
Arguments
format
a character vector of strings to test
Details
Valid formats include "FASTA", "PHYLIP", "SS" (Sufficient statistics
format used by PHAST), "MPM" (format used by MultiPipMaker),
"LAV" (used by blastz), or "MAF" (Multiple Alignment Format used by
MULTIZ and TBA.
Value
a logical vector indicating whether each element of the
input parameter is a valid format string.
Author(s)
Melissa J. Hubisz
Examples
1
2
is.format.msa(c("MAF", "SS", "PHYLIP", "MPM", "LAV", "FASTA",
"BAD_FORMAT_STRING"))
rphast documentation built on May 1, 2019, 9:26 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Returns TRUE if the argument is a valid string describing a multiple sequence alignment (MSA) format.
Usage
1 |
Arguments
format |
a character vector of strings to test |
Details
Valid formats include "FASTA", "PHYLIP", "SS" (Sufficient statistics format used by PHAST), "MPM" (format used by MultiPipMaker), "LAV" (used by blastz), or "MAF" (Multiple Alignment Format used by MULTIZ and TBA.
Value
a logical vector indicating whether each element of the input parameter is a valid format string.
Author(s)
Melissa J. Hubisz
Examples
1 2 | is.format.msa(c("MAF", "SS", "PHYLIP", "MPM", "LAV", "FASTA",
"BAD_FORMAT_STRING"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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