is.ordered.msa: MSA is Ordered?
In rphast: Interface to 'PHAST' Software for Comparative Genomics
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Determines if an MSA object represents an ordered alignment.
Usage
1
2
## S3 method for class 'msa'
is.ordered(x)
Arguments
x
an MSA object
Value
a boolean indicating whether the columns are in order
Author(s)
Melissa J. Hubisz and Adam Siepel
Examples
1
2
3
4
5
6
m <- msa(seqs=c("A--ACGTAT", "AG-AGGTAA", "AGGAGGTAG"),
names=c("human", "mouse", "rat"))
is.ordered.msa(m)
m <- msa(seqs=c("A--ACGTAT", "AG-AGGTAA", "AGGAGGTAG"),
names=c("human", "mouse", "rat"), is.ordered=FALSE)
is.ordered.msa(m)
rphast documentation built on May 1, 2019, 9:26 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Determines if an MSA object represents an ordered alignment.
Usage
1 2 | ## S3 method for class 'msa'
is.ordered(x)
|
Arguments
x |
an MSA object |
Value
a boolean indicating whether the columns are in order
Author(s)
Melissa J. Hubisz and Adam Siepel
Examples
1 2 3 4 5 6 | m <- msa(seqs=c("A--ACGTAT", "AG-AGGTAA", "AGGAGGTAG"),
names=c("human", "mouse", "rat"))
is.ordered.msa(m)
m <- msa(seqs=c("A--ACGTAT", "AG-AGGTAA", "AGGAGGTAG"),
names=c("human", "mouse", "rat"), is.ordered=FALSE)
is.ordered.msa(m)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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