read.newick.tree: Read a Newick Tree from a File
In rphast: Interface to 'PHAST' Software for Comparative Genomics
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Read a tree from a file
Usage
1
read.newick.tree(filename)
Arguments
filename
The file containing the tree.
Details
Reads a tree in newick format
Value
a character string representing the tree in newick format
Author(s)
Melissa J. Hubisz and Adam Siepel
Examples
1
2
3
4
5
cat(c("((hg18:0.142679,(mm9:0.083220,rn4:0.090564):0.269385):0.020666,canFam2:0.193569);",
"(human, (mouse, rat));",
sep="\n"), file="test.nh")
read.newick.tree("test.nh")
unlink("test.nh")
Example output
[1] "((hg18:0.142679,(mm9:0.083220,rn4:0.090564):0.269385):0.020666,canFam2:0.193569);"
[2] "(human,(mouse,rat));"
rphast documentation built on May 1, 2019, 9:26 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Read a tree from a file
Usage
1 | read.newick.tree(filename)
|
Arguments
filename |
The file containing the tree. |
Details
Reads a tree in newick format
Value
a character string representing the tree in newick format
Author(s)
Melissa J. Hubisz and Adam Siepel
Examples
1 2 3 4 5 | cat(c("((hg18:0.142679,(mm9:0.083220,rn4:0.090564):0.269385):0.020666,canFam2:0.193569);",
"(human, (mouse, rat));",
sep="\n"), file="test.nh")
read.newick.tree("test.nh")
unlink("test.nh")
|
Example output
[1] "((hg18:0.142679,(mm9:0.083220,rn4:0.090564):0.269385):0.020666,canFam2:0.193569);"
[2] "(human,(mouse,rat));"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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