write.hmm: Write an HMM object to a file
In rphast: Interface to 'PHAST' Software for Comparative Genomics

Description Usage Arguments Author(s) Examples

Write an HMM object to a file

1	write.hmm(x, filename, append = FALSE)

`x`	An object of type `hmm`
`filename`	The name of the file to write to (if NULL, write to terminal)
`append`	If `TRUE`, append hmm to existing file, otherwise overwrite.

Melissa J. Hubisz and Adam Siepel

state.names <- c("neutral", "conserved")
h <- hmm(matrix(c(0.99, 0.01, 0.01, 0.99), nrow=2,
                dimnames=list(state.names, state.names)),
                eq.freq=c(neutral=0.9, conserved=0.1))
filename <- tempfile()
write.hmm(h, filename)
unlink(filename)