write.wig: Writing a wig file

In rphast: Interface to 'PHAST' Software for Comparative Genomics

Description

Write a fixedStep wig file

Usage

write.wig(chrom, start, score, span = 1, file = NULL, append = FALSE)

Arguments

chrom	A character vector giving chromosome name for each point. Will be recycled to length(start)
start	An integer vector giving start coordinate for each point.
score	A numeric vector giving score at each point Will be recycled to length(start)
span	An integer giving span (ie, length) of each element (all elements must have the same length, so only a single value is allowed).
file	The name of the file to write to (will be overwritten). A value of NULL implies write to console.
append	Whether to append to the file. If FALSE, file will be overwritten.

Author(s)

Melissa J. Hubisz

Examples

write.wig(chrom=c("chr1", "chr1", "chr1", "chr1", "chr2"),
          start=c(1, 11, 21, 100, 1),
          span=3,
          score=runif(5))

rphast documentation built on May 1, 2019, 9:26 p.m.