Files in sdtmchecks

Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

NEWS.md README.md R/check_ae_aestdtc_after_dd.R R/check_ts_sstdtc_ds_consent.R R/check_ds_ex_after_discon.R R/check_ae_aeout_aeendtc_aedthdtc.R R/check_lb_lbstresu.R R/check_ec_sc_lat.R R/check_qs_qsdtc_after_dd.R R/check_tr_trdtc_across_visit.R R/check_sc_dm_seyeselc.R R/check_sc_dm_eligcrit.R R/check_eg_egdtc_visit_ordinal_error.R R/check_dv_covid.R R/check_ae_aerel.R R/check_ae_aeacnoth_ds_stddisc_covid.R R/check_ae_aelat.R R/check_ex_extrt_exoccur.R R/check_ds_multdeath_dsstdtc.R R/check_ds_duplicate_randomization.R R/check_qs_qsstat_qsreasnd.R R/check_cm_cmlat_prior_ocular.R R/check_ex_exdosu.R R/check_ex_exoccur_mis_exdose_nonmis.R R/check_ae_aedthdtc_ds_death.R R/check_ae_aetoxgr.R R/check_ex_exstdtc_visit_ordinal_error.R R/check_dm_ae_ds_death.R R/check_ae_death.R R/check_dd_ae_aedthdtc_ds_dsstdtc.R R/check_mh_missing_month.R R/check_ts_cmdict.R R/check_oe_bcva_1m_late_early_tot.R R/check_ds_sc_strat.R R/check_vs_vsdtc_after_dd.R R/check_rs_rsdtc_visit_ordinal_error.R R/data.R R/check_ae_aeout.R R/check_ds_ae_discon.R R/check_oe_sc_lat_count_fingers.R R/check_qs_dup.R R/check_dv_ae_aedecod_covid.R R/check_vs_sbp_lt_dbp.R R/check_lb_lbstresc_char.R R/check_tr_trdtc_visit_ordinal_error.R R/check_tu_tudtc_visit_ordinal_error.R R/check_qs_qsstat_qsstresc.R R/check_ss_ssdtc_dead_dthdtc.R R/check_dd_death_date.R R/check_oe_bcva_4m_late_early_tot.R R/check_lb_lbdtc_after_dd.R R/check_tr_dup.R R/check_ae_aeacnoth_ds_disctx.R R/check_ex_exdose_pos_exoccur_no.R R/check_ex_infusion_exstdtc_exendtc.R R/check_dm_dthfl_dthdtc.R R/check_dm_armcd.R R/check_ae_death_ds_discon.R R/check_ae_fatal.R R/check_lb_lbstresn_missing.R R/check_lb_lbdtc_visit_ordinal_error.R R/check_ae_withdr_ds_discon.R R/check_ds_dsdecod_dsstdtc.R R/check_ae_aedecod.R R/check_tr_trstresn_ldiam.R R/check_ex_dup.R R/check_ae_ds_partial_death_dates.R R/check_rs_rsdtc_visit.R R/check_ae_aestdtc_after_aeendtc.R R/check_ae_aedthdtc_aesdth.R R/check_ae_dup.R R/check_rs_rsdtc_across_visit.R R/check_mi_mispec.R R/check_ex_exstdtc_after_dd.R R/run_all_checks.R R/check_ss_ssstat_ssorres.R R/check_ae_aesdth_aedthdtc.R R/check_lb_lbstnrlo_lbstnrhi.R R/check_qs_qsdtc_visit_ordinal_error.R R/check_ds_dsscat.R R/check_tu_tuloc_missing.R R/check_dm_usubjid_ae_usubjid.R R/check_ex_exstdtc_after_exendtc.R R/check_ex_visit.R R/check_pr_prlat.R R/check_cm_missing_month.R R/check_dd_ae_aeout_aedthdtc.R R/check_ds_dsdecod_death.R R/check_dm_age_missing.R R/check_ae_aeacn_ds_disctx_covid.R R/globals.R R/check_lb_missing_month.R R/check_tu_rs_new_lesions.R R/check_ts_aedict.R R/check_ae_aeacnoth.R R/check_dm_actarm_arm.R R/check_ds_dsterm_death_due_to.R R/check_tu_tudtc_across_visit.R R/check_oe_bcva_tot_mismatch.R R/check_cm_cmlat.R R/check_oe_bcva_4m_vs_1m_req.R R/check_ss_ssdtc_dead_ds.R R/check_cm_cmindc.R R/check_tu_tudtc.R R/check_ss_ssdtc_alive_dm.R R/check_rs_rscat_rsscat.R R/check_ce_missing_month.R R/check_ex_exdose_exoccur.R R/sdtmchecks-package.R R/check_ex_exoccur_exdose_exstdtc.R R/run_check.R R/roche_utils.R R/check_ae_aeout_aeendtc_nonfatal.R R/utils.R R/check_vs_height.R R/check_pr_missing_month.R R/check_dm_usubjid_dup.R R/check_cm_cmdecod.R inst/sdtmchecksmeta.R inst/doc/search_checks.Rmd inst/doc/write_a_check.R inst/doc/write_a_check.Rmd inst/doc/faqs.Rmd inst/doc/sdtmchecks.R inst/doc/search_checks.R inst/doc/sdtmchecks.Rmd tests/testthat.R tests/testthat/test-check_rs_rsdtc_across_visit.R tests/testthat/test-check_tu_tudtc.R tests/testthat/test-check_dm_ae_ds_death.R tests/testthat/test-check_tr_trdtc_visit_ordinal_error.R tests/testthat/test-check_rs_rsdtc_visit_ordinal_error.R tests/testthat/test-check_ae_aeacn_ds_disctx_covid.R tests/testthat/test-check_lb_lbstresn_missing.R tests/testthat/test-check_cm_cmdecod.R tests/testthat/test-check_qs_qsdtc_visit_ordinal_error.R tests/testthat/test-check_ds_ex_after_discon.R tests/testthat/test-check_tu_tuloc_missing.R tests/testthat/test-check_qs_qsstat_qsstresc.R tests/testthat/test-check_oe_sc_lat_count_fingers.R tests/testthat/test-check_ae_aeout.R tests/testthat/test-check_ae_aerel.R tests/testthat/test-check_dm_usubjid_dup.R tests/testthat/test-check_mh_missing_month.R tests/testthat/test-check_ae_aedthdtc_ds_death.R tests/testthat/test-check_mi_mispec.R tests/testthat/test-check_ae_aetoxgr.R tests/testthat/test-check_oe_bcva_4m_vs_1m_req.R tests/testthat/test-check_ex_exdose_exoccur.R tests/testthat/test-check_dv_covid.R tests/testthat/test-check_oe_bcva_tot_mismatch.R tests/testthat/test-check_tr_dup.R tests/testthat/test-check_ae_aeout_aeendtc_aedthdtc.R tests/testthat/test-check_cm_missing_month.R tests/testthat/test-check_ae_aestdtc_after_aeendtc.R tests/testthat/test-check_ss_ssdtc_dead_dthdtc.R tests/testthat/test-check_ae_withdr_ds_discon.R tests/testthat/test-check_cm_cmlat_prior_ocular.R tests/testthat/test-check_ae_aestdtc_after_dd.R tests/testthat/test-check_dm_usubjid_ae_usubjid.R tests/testthat/test-check_ae_death.R tests/testthat/test-check_ae_aeout_aeendtc_nonfatal.R tests/testthat/test-check_ae_aedthdtc_aesdth.R tests/testthat/test-check_ss_ssdtc_dead_ds.R tests/testthat/test-check_vs_sbp_lt_dbp.R tests/testthat/test-check_lb_missing_month.R tests/testthat/test-check_ae_death_ds_discon.R tests/testthat/test-check_ae_aelat.R tests/testthat/test-check_ds_dsscat.R tests/testthat/test-check_ex_exdosu.R tests/testthat/test-check_tr_trstresn_ldiam.R tests/testthat/test-check_eg_egdtc_visit_ordinal_error.R tests/testthat/test-check_ts_aedict.R tests/testthat/test-roche_utils.R tests/testthat/test-check_ex_infusion_exstdtc_exendtc.R tests/testthat/test-check_ex_visit.R tests/testthat/test-check_tr_trdtc_across_visit.R tests/testthat/test-check_lb_lbdtc_visit_ordinal_error.R tests/testthat/test-check_pr_prlat.R tests/testthat/test-check_oe_bcva_4m_late_early_tot.R tests/testthat/test-check_lb_lbstresc_char.R tests/testthat/test-check_dd_ae_aeout_aedthdtc.R tests/testthat/test-check_ds_ae_discon.R tests/testthat/test-check_dm_dthfl_dthdtc.R tests/testthat/test-check_ex_exdose_pos_exoccur_no.R tests/testthat/test-check_ae_aeacnoth.R tests/testthat/test-check_lb_lbdtc_after_dd.R tests/testthat/test-check_ex_exoccur_exdose_exstdtc.R tests/testthat/test-check_ae_aeacnoth_ds_disctx.R tests/testthat/test-check_qs_qsdtc_after_dd.R tests/testthat/test-check_ds_multdeath_dsstdtc.R tests/testthat/test-check_ae_aesdth_aedthdtc.R tests/testthat/test-check_vs_vsdtc_after_dd.R tests/testthat/test-check_ex_extrt_exoccur.R tests/testthat/test-check_ss_ssdtc_alive_dm.R tests/testthat/test-check_oe_bcva_1m_late_early_tot.R tests/testthat/test-check_tu_tudtc_visit_ordinal_error.R tests/testthat/test-check_cm_cmindc.R tests/testthat/test-check_dv_ae_aedecod_covid.R tests/testthat/test-check_sc_dm_seyeselc.R tests/testthat/test-check_ce_missing_month.R tests/testthat/test-check_lb_lbstresu.R tests/testthat/test-check_ds_sc_strat.R tests/testthat/test-check_qs_dup.R tests/testthat/test-check_qs_qsstat_qsreasnd.R tests/testthat/test-check_ts_sstdtc_ds_consent.R tests/testthat/test-check_cm_cmlat.R tests/testthat/test-check_ex_exstdtc_after_exendtc.R tests/testthat/test-check_ae_aedecod.R tests/testthat/test-check_dm_age_missing.R tests/testthat/test-check_dd_death_date.R tests/testthat/test-check_ae_fatal.R tests/testthat/test-check_dm_actarm_arm.R tests/testthat/test-check_ex_exstdtc_after_dd.R tests/testthat/test-check_ec_sc_lat.R tests/testthat/test-check_rs_rscat_rsscat.R tests/testthat/test-check_ds_dsterm_death_due_to.R tests/testthat/test-check_sc_dm_eligcrit.R tests/testthat/test-check_dm_armcd.R tests/testthat/test-check_pr_missing_month.R tests/testthat/test-check_ds_dsdecod_death.R tests/testthat/test-check_ae_dup.R tests/testthat/test-check_tu_rs_new_lesions.R tests/testthat/test-check_dd_ae_aedthdtc_ds_dsstdtc.R tests/testthat/test-check_ts_cmdict.R tests/testthat/test-check_ae_aeacnoth_ds_stddisc_covid.R tests/testthat/test-check_lb_lbstnrlo_lbstnrhi.R tests/testthat/test-check_tu_tudtc_across_visit.R tests/testthat/test-check_ds_duplicate_randomization.R tests/testthat/test-check_ex_exoccur_mis_exdose_nonmis.R tests/testthat/test-check_ex_exstdtc_visit_ordinal_error.R tests/testthat/test-check_rs_rsdtc_visit.R tests/testthat/test-check_vs_height.R tests/testthat/test-check_ae_ds_partial_death_dates.R tests/testthat/test-check_ss_ssstat_ssorres.R tests/testthat/test-check_ex_dup.R tests/testthat/test-check_ds_dsdecod_dsstdtc.R vignettes/search_checks.Rmd vignettes/write_a_check.Rmd vignettes/faqs.Rmd vignettes/sdtmchecks.Rmd man/is_sas_na.Rd man/check_ae_dup.Rd man/check_ae_aerel.Rd man/check_oe_sc_lat_count_fingers.Rd man/check_qs_qsdtc_after_dd.Rd man/check_dm_dthfl_dthdtc.Rd man/check_pr_missing_month.Rd man/check_cm_cmdecod.Rd man/check_cm_cmlat.Rd man/check_ae_aesdth_aedthdtc.Rd man/check_qs_qsstat_qsreasnd.Rd man/check_ds_duplicate_randomization.Rd man/grapes-has_any-grapes.Rd man/check_oe_bcva_1m_late_early_tot.Rd man/check_dd_ae_aedthdtc_ds_dsstdtc.Rd man/check_ec_sc_lat.Rd man/check_tr_dup.Rd man/check_ce_missing_month.Rd man/check_vs_sbp_lt_dbp.Rd man/check_lb_lbstnrlo_lbstnrhi.Rd man/convert_var_to_ascii.Rd man/check_ss_ssdtc_alive_dm.Rd man/check_lb_lbdtc_visit_ordinal_error.Rd man/check_ae_withdr_ds_discon.Rd man/check_ds_ex_after_discon.Rd man/check_ss_ssdtc_dead_ds.Rd man/check_dd_death_date.Rd man/check_ae_death.Rd man/fail.Rd man/check_ae_aeout.Rd man/run_check.Rd man/check_lb_lbstresc_char.Rd man/check_ae_ds_partial_death_dates.Rd man/nickname.Rd man/check_tr_trdtc_visit_ordinal_error.Rd man/dtc_dupl_early.Rd man/check_oe_bcva_4m_vs_1m_req.Rd man/check_dm_usubjid_dup.Rd man/check_ds_dsdecod_dsstdtc.Rd man/check_ae_death_ds_discon.Rd man/check_ts_sstdtc_ds_consent.Rd man/check_sc_dm_seyeselc.Rd man/check_dm_usubjid_ae_usubjid.Rd man/check_ex_exdose_pos_exoccur_no.Rd man/report_to_xlsx.Rd man/check_oe_bcva_tot_mismatch.Rd man/check_qs_qsstat_qsstresc.Rd man/sdtmchecksmeta.Rd man/sdtmchecks-package.Rd man/check_ae_aetoxgr.Rd man/check_ss_ssdtc_dead_dthdtc.Rd man/check_dm_armcd.Rd man/check_ds_dsterm_death_due_to.Rd man/check_ex_infusion_exstdtc_exendtc.Rd man/grapes-lacks_all-grapes.Rd man/check_ae_aeacnoth_ds_stddisc_covid.Rd man/check_ae_aeacnoth.Rd man/check_dm_age_missing.Rd man/check_ex_exstdtc_visit_ordinal_error.Rd man/impute_day01.Rd man/check_ex_exoccur_mis_exdose_nonmis.Rd man/check_lb_lbstresn_missing.Rd man/pass.Rd man/check_ae_aedthdtc_aesdth.Rd man/check_rs_rsdtc_visit.Rd man/check_ae_aedthdtc_ds_death.Rd man/check_rs_rsdtc_visit_ordinal_error.Rd man/check_ex_exdosu.Rd man/roche_derive_rave_row.Rd man/check_lb_missing_month.Rd man/check_dm_ae_ds_death.Rd man/check_ae_fatal.Rd man/check_cm_cmlat_prior_ocular.Rd man/check_lb_lbdtc_after_dd.Rd man/truncate_var_strings.Rd man/check_tu_tudtc.Rd man/check_tu_tudtc_visit_ordinal_error.Rd man/check_dv_ae_aedecod_covid.Rd man/check_ds_multdeath_dsstdtc.Rd man/check_cm_missing_month.Rd man/check_sc_dm_eligcrit.Rd man/check_ex_dup.Rd man/check_ex_exstdtc_after_exendtc.Rd man/check_ae_aestdtc_after_dd.Rd man/check_ae_aestdtc_after_aeendtc.Rd man/check_vs_vsdtc_after_dd.Rd man/check_ex_exstdtc_after_dd.Rd man/check_qs_dup.Rd man/check_qs_qsdtc_visit_ordinal_error.Rd man/missing_month.Rd man/grapes-lacks_any-grapes.Rd man/check_dv_covid.Rd man/check_tr_trstresn_ldiam.Rd man/check_mi_mispec.Rd man/check_tr_trdtc_across_visit.Rd man/check_oe_bcva_4m_late_early_tot.Rd man/check_dd_ae_aeout_aedthdtc.Rd man/check_ts_aedict.Rd man/check_ex_exoccur_exdose_exstdtc.Rd man/grapes-has_all-grapes.Rd man/check_ex_exdose_exoccur.Rd man/check_rs_rsdtc_across_visit.Rd man/check_ae_aeout_aeendtc_aedthdtc.Rd man/check_ex_extrt_exoccur.Rd man/check_ae_aeacn_ds_disctx_covid.Rd man/check_pr_prlat.Rd man/create_R_script.Rd man/check_tu_rs_new_lesions.Rd man/check_ae_aeacnoth_ds_disctx.Rd man/run_all_checks.Rd man/check_ss_ssstat_ssorres.Rd man/check_vs_height.Rd man/check_ae_aelat.Rd man/check_eg_egdtc_visit_ordinal_error.Rd man/check_ts_cmdict.Rd man/lacks_msg.Rd man/check_ds_dsscat.Rd man/diff_reports.Rd man/check_ex_visit.Rd man/check_tu_tuloc_missing.Rd man/check_cm_cmindc.Rd man/check_dm_actarm_arm.Rd man/check_ae_aedecod.Rd man/check_lb_lbstresu.Rd man/check_mh_missing_month.Rd man/check_rs_rscat_rsscat.Rd man/check_tu_tudtc_across_visit.Rd man/check_ds_ae_discon.Rd man/check_ds_sc_strat.Rd man/check_ae_aeout_aeendtc_nonfatal.Rd man/check_ds_dsdecod_death.Rd man/roxygen/meta.R