API for surveillance
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena

Global functions
.eh Source code
.fisherinfo Source code
.hcl.colors Man page
.lmarg.lambda Source code
.loglik Source code
.pfisherinfo Source code
.ploglik Source code
.pscore Source code
.score Source code
.updateMoveExpr Source code
AIC.twinSIR Man page
Egd Source code
LLR.fun Man page Source code
LRCUSUM.runlength Man page Source code
Lambda Source code
MMRcoverageDE Man page
R0 Man page
R0.simEpidataCS Man page
R0.twinstim Man page
RPS Man page Source code
W_np Man page
W_powerlaw Man page
Ztilde.chibarsq Source code
[,sts,ANY,ANY,ANY-method Man page
[,sts-method Man page
[.epidata Man page
[.epidataCS Man page
abattoir Man page
add.legend Source code
add1.twinstim Man page
addFormattedXAxis Man page Source code
addSeason2formula Man page
aggregate,sts-method Man page
aggregate.disProg Man page Source code
aggregate.hhh4sims Man page
aggregate.hhh4simslist Man page
aggregate.sts Man page Source code
alarms Man page
alarms,sts-method Man page
alarms<- Man page
alarms<-,sts-method Man page
algo.bayes Man page Source code
algo.bayes1 Man page Source code
algo.bayes2 Man page Source code
algo.bayes3 Man page Source code
algo.bayesLatestTimepoint Man page Source code
algo.call Man page Source code
algo.cdc Man page Source code
algo.cdcLatestTimepoint Man page Source code
algo.compare Man page Source code
algo.cusum Man page Source code
algo.farrington Man page Source code
algo.farrington.assign.weights Man page Source code
algo.farrington.data.glm Source code
algo.farrington.fitGLM Man page Source code
algo.farrington.fitGLM.fast Man page Source code
algo.farrington.fitGLM.flexible Source code
algo.farrington.fitGLM.populationOffset Man page Source code
algo.farrington.glm Source code
algo.farrington.referencetimepoints Source code
algo.farrington.threshold Man page Source code
algo.farrington.threshold.farrington Source code
algo.farrington.threshold.noufaily Source code
algo.glrnb Man page Source code
algo.glrpois Man page Source code
algo.hhh Man page
algo.hhh.grid Man page
algo.hmm Man page Source code
algo.outbreakP Man page Source code
algo.quality Man page
algo.rki Man page Source code
algo.rki1 Man page Source code
algo.rki2 Man page Source code
algo.rki3 Man page Source code
algo.rkiLatestTimepoint Man page Source code
algo.rogerson Man page Source code
algo.summary Man page Source code
algo.twins Man page Source code
all.equal.hhh4 Man page
all.equal.twinstim Man page
amplitudeShift2sinCos Source code
animate Man page
animate.epidata Man page
animate.epidataCS Man page
animate.sts Man page
animate.summary.epidata Man page
animate_nowcasts Man page Source code
anscombe.residuals Man page Source code
anscombeNB Source code
arlCusum Man page Source code
as.data.frame,sts-method Man page
as.data.frame.sts Man page Source code
as.epidata Man page
as.epidata.data.frame Man page
as.epidata.default Man page Source code
as.epidata.epidataCS Man page
as.epidataCS Man page
as.hhh4simslist Man page
as.stepfun.epidataCS Man page
as.ts.sts Man page
as.xts.sts Man page
at2ndChange Man page Source code
atChange Man page Source code
atMedian Man page Source code
autoplot.sts Man page
backprojNP Man page Source code
backprojNP.fit Man page Source code
bayes Man page Source code
bestCombination Man page Source code
bisection Source code
blocks Source code
boda Man page Source code
bodaDelay Man page Source code
bodaDelay.data.glm Source code
bodaDelay.fitGLM Source code
bodaDelay.threshold Source code
bodaFit Source code
calc.outbreakP.statistic Man page Source code
calibrationTest Man page
calibrationTest.default Man page
calibrationTest.hhh4 Man page
calibrationTest.oneStepAhead Man page
campyDE Man page
catcusum.LLRcompute Man page Source code
categoricalCUSUM Man page Source code
checkDerivatives.maxLik Source code
checkDerivatives.numDeriv Source code
checkFormula Source code
checkResidualProcess Man page
clapply Man page
coef.epitest Man page
coef.hhh4 Man page Source code
coefW Man page
coeflist Man page
coeflist.default Man page
coeflist.hhh4 Man page
coeflist.twinstim Man page
coerce,epidataCS,SpatialPointsDataFrame-method Man page
coerce,sts,stsBP-method Man page
coerce,sts,stsNC-method Man page
coerce,sts,ts-method Man page
coerce,ts,sts-method Man page
commonDenom Source code
compMatrix.writeTable Man page
confint.hhh4 Man page
confint.oneStepAhead Man page
control Man page
control,sts-method Man page
control<- Man page
control<-,sts-method Man page
correct53to52 Man page
cox Man page
create.disProg Man page Source code
create.grid Man page
cusum Man page Source code
d2Sigma1 Source code
d2Sigma2 Source code
d2Sigma3 Source code
dSigma1 Source code
dSigma2 Source code
dSigma3 Source code
dbnb Source code
decompose.hhh4 Man page
delayCDF Man page
delayCDF,stsNC-method Man page
deleval Man page
dim,sts-method Man page
dimnames,sts-method Man page
disProg2sts Man page Source code
discpoly Man page
dist.median Man page Source code
dpost.bnb Source code
dpost.bnb.unorm Source code
drop1.twinstim Man page
dss Man page
earsC Man page Source code
em.step.becker Man page Source code
enlargeData Man page
epidata Man page
epidataCS Man page
epidataCS2sts Man page
epidataCSplot_space Man page
epidataCSplot_time Man page
epitest Man page
epoch Man page
epoch,sts-method Man page
epoch<- Man page
epoch<-,sts-method Man page
epochInYear Man page
epochInYear,sts-method Man page
estimateGLRNbHook Man page Source code
extractAIC.twinSIR Man page
fanplot Man page
farrington Man page Source code
farringtonFlexible Man page Source code
fe Man page Source code
find.kh Man page Source code
findH Man page Source code
findK Man page Source code
fitHHH Source code
fix.dimnames Source code
fixef Man page
fixef.hhh4 Man page
fluBYBW Man page
fooepidata Man page
formatDate Man page Source code
formatPval Man page
formula.hhh4 Man page
formulaGLM Source code
formulaGLMDelay Source code
getHK Source code
getMaxEV Man page
getMaxEV_season Man page
getNEweights Man page
getSeason Source code
getSigma Source code
getSigmaInv Source code
getSigmai Source code
getSigmaiInv Source code
getSourceDists Man page
getTheta1 Source code
glm_epidataCS Man page
glrnb Man page Source code
glrpois Man page Source code
gsub2 Source code
h1_nrwrp Man page
hValues Man page Source code
ha Man page
ha.sts Man page
hagelloch Man page
hagelloch.df Man page
haz2pmf Source code Source code
head.epidataCS Man page
hepatitisA Man page
hhh4 Man page
hmm Man page Source code
husO104Hosp Man page
hypgeom2F1special Source code
iafplot Man page
imdepi Man page
imdepifit Man page
influMen Man page
init.sts Source code
init.stsBP Source code
init.stsNC Source code
inside.gpc.poly Man page Source code
intensity.twinstim Man page
intensityplot Man page
intensityplot.simEpidata Man page
intensityplot.simEpidataCS Man page
intensityplot.twinSIR Man page
intensityplot.twinstim Man page
intensityplot_twinSIR Source code
intersectPolyCircle Man page
intersectPolyCircle.SpatialPolygons Man page
intersectPolyCircle.gpc.poly Man page
intersectPolyCircle.owin Man page
intersperse Man page
isInModel Source code
isScalar Man page
isoWeekYear Man page Source code
jacobianAmplitudeShift Source code
k1 Man page
knox Man page
ks.plot.unif Man page
layout.labels Man page
layout.scalebar Man page
linelist2sts Man page Source code
logInterpolation Source code
logLik.hhh4 Man page Source code
logLik.twinSIR Man page
logLik.twinstim Man page
logS Man page Source code
lognormDiscrete Source code
logs Man page
m1 Man page
m2 Man page
m3 Man page
m4 Man page
m5 Man page
magic.dim Man page Source code
make.nu Source code
make.pois Source code
makeControl Man page
makePlot Man page
marFisher Source code
marLogLik Source code
marScore Source code
marks Man page
marks.epidataCS Man page
meanHHH Man page Source code
measles.weser Man page
measlesDE Man page
measlesWeserEms Man page
meningo.age Man page
momo Man page
multinomialTS Man page
multinomialTS,sts-method Man page
multinomialTS<- Man page
multinomialTS<-,sts-method Man page
multiplicity Man page
multiplicity.Spatial Man page
n1 Man page
n2 Man page
na2FALSE Source code
naninf2zero Man page Source code
nbOrder Man page
neighbourhood Man page
neighbourhood,sts-method Man page
neighbourhood<- Man page
neighbourhood<-,sts-method Man page
newtonRaphson Source code
nobs.epidataCS Man page
nobs.hhh4 Man page
nobs.twinstim Man page
nowcast Man page Source code
observed Man page
observed,sts-method Man page
observed<- Man page
observed<-,sts-method Man page
oneStepAhead Man page Source code
outbreakP Man page Source code
outcomeFunStandard Man page Source code
outside.ci Man page Source code
pairedbinCUSUM Man page Source code
pairedbinCUSUM.LLRcompute Man page Source code
pairedbinCUSUM.runlength Man page Source code
penFisher Source code
penLogLik Source code
penScore Source code
permutationTest Man page Source code
permute.epidataCS Man page
pit Man page
pit.default Man page
pit.hhh4 Man page
pit.oneStepAhead Man page
plapply Man page
plot,sts,missing-method Man page
plot,stsNC,missing-method Man page
plot.atwins Man page Source code
plot.disProg Man page Source code
plot.disProg.one Man page Source code
plot.epidata Man page Source code
plot.epidataCS Man page
plot.epitest Man page
plot.hhh4 Man page
plot.hhh4sims Man page
plot.hhh4simslist Man page
plot.knox Man page
plot.oneStepAhead Man page
plot.profile.twinSIR Man page Source code
plot.stKtest Man page
plot.sts Man page
plot.summary.epidata Man page
plot.survRes Man page Source code
plot.survRes.one Man page Source code
plot.twinSIR Man page
plot.twinstim Man page
plotHHH4_fitted Man page
plotHHH4_fitted1 Man page Source code
plotHHH4_maps Man page
plotHHH4_maxEV Man page
plotHHH4_neweights Man page
plotHHH4_ri Man page
plotHHH4_season Man page
plotHHH4sims_fan Man page
plotHHH4sims_size Man page
plotHHH4sims_time Man page
pmfQuantile Source code
pmix Source code
pois.plot Source code
poly2adjmat Man page
polyAtBorder Man page
population Man page
population,sts-method Man page
population<- Man page
population<-,sts-method Man page
predict.hhh4 Man page Source code
predint Man page
predint,stsNC-method Man page
primeFactors Man page Source code
print.algoQV Man page Source code
print.disProg Man page Source code
print.epidata Man page
print.epidataCS Man page
print.hhh4 Man page
print.summary.epidata Man page Source code
print.summary.epidataCS Man page
print.summary.hhh4 Man page
print.summary.twinSIR Man page
print.summary.twinstim Man page
print.twinSIR Man page
print.twinstim Man page
profile.twinSIR Man page
profile.twinstim Man page
q1_nrwh Man page
q2 Man page
qlomax Man page
qmix Source code
quantile.oneStepAhead Man page
ranef Man page
ranef.hhh4 Man page
readData Man page
refvalIdxByDate Man page Source code
reportingTriangle Man page
reportingTriangle,stsNC-method Man page
reset.surveillance.options Man page
residuals.hhh4 Man page
residuals.simEpidataCS Man page
residuals.twinSIR Man page Source code
residuals.twinstim Man page
rgd Source code
ri Man page Source code
rki Man page Source code
rogerson Man page Source code
rotaBB Man page
rpost.bnb Source code
rps Man page
runifdisc Man page
s1 Man page
s2 Man page
s3 Man page
salmAllOnset Man page
salmHospitalized Man page
salmNewport Man page
salmonella.agona Man page
scale.gpc.poly Man page
score Man page
score,stsNC-method Man page
scores Man page
scores.default Man page Source code
scores.hhh4 Man page
scores.hhh4sims Man page
scores.hhh4simslist Man page
scores.oneStepAhead Man page
ses Man page
shadar Man page
siaf Man page
siaf.constant Man page
siaf.exponential Man page
siaf.gaussian Man page
siaf.powerlaw Man page
siaf.powerlaw1 Man page
siaf.powerlawL Man page
siaf.simulatePC Man page
siaf.step Man page
siaf.student Man page
sim.pointSource Man page Source code
sim.seasonalNoise Man page Source code
simEndemicEvents Man page
simEpidata Man page
simEpidataCS Man page
simHHH4 Source code
simpleR0 Man page
simulate.hhh4 Man page
simulate.twinSIR Man page
simulate.twinstim Man page
sinCos2amplitudeShift Source code
sizeHHH Man page
splitParams Source code
sqrtOf1pr2 Source code
stKtest Man page
stateplot Man page Source code
stcd Man page Source code
stepComponent Man page
sts Man page
sts-class Man page
sts2disProg Man page Source code
stsBP-class Man page
stsNC-class Man page
stsNC_plotDelay Source code
stsNClist_animate Man page
stsNewport Man page
sts_creation Man page Source code
sts_observation Man page Source code
stsplot Man page
stsplot_alarm Man page Source code
stsplot_space Man page
stsplot_spacetime Man page Source code
stsplot_time Man page Source code
stsplot_time1 Man page Source code
subset.epidataCS Man page
summary.epidata Man page
summary.epidataCS Man page
summary.hhh4 Man page
summary.twinSIR Man page
summary.twinstim Man page
surveillance-defunct Man page
surveillance-deprecated Man page
surveillance.options Man page
tail.epidataCS Man page
terms.hhh4 Man page
test Man page
testSim Man page
tiaf Man page
tiaf.constant Man page
tiaf.exponential Man page
tiaf.step Man page
tidy.sts Man page
tms.plot Source code
toFileDisProg Man page
toLatex,sts-method Man page
toLatex.knox Man page
toLatex.sts Man page Source code
toLatex.summary.twinstim Man page
twinSIR Man page
twinstim Man page
unionSpatialPolygons Man page
untie Man page
untie.default Man page
untie.epidataCS Man page
untie.matrix Man page
update.epidata Man page
update.epidataCS Man page
update.hhh4 Man page
update.twinstim Man page
upperbound Man page
upperbound,sts-method Man page
upperbound<- Man page
upperbound<-,sts-method Man page
vcov.hhh4 Man page
vcov.twinSIR Man page
vcov.twinstim Man page
w.chibarsq.sim Source code
wrap.algo Man page Source code
xtable.algoQV Man page Source code
xtable.summary.twinstim Man page
xtable.twinstim Man page
year Man page
year,sts-method Man page
zetaweights Man page
surveillance documentation built on March 31, 2021, 9:08 a.m.