API for sybil
Efficient Constrained Based Modelling

Global functions
.bracket_pairs	Source code
.ceilValues	Source code
.checkEmptyField	Source code
.check_brackets	Source code
.createReactionString	Source code
.deadEndMetabolite	Source code
.doInRound	Source code
.floorValues	Source code
.generateFluxdels	Source code
.generateModKey	Source code
.generateWT	Source code
.makeLPcompatible	Source code
.onLoad	Source code
.parseBoolean	Source code
.ppProcessing	Source code
.prepareSubSysMatrix	Source code
.printLogComment	Source code
.printNamedList	Source code
.progressDots	Source code
.reassignFwBwMatch	Source code
.recodeMatrix	Source code
.singletonMetabolite	Source code
.validmodelorg	Source code
.validoptsol	Source code
.validreact	Source code
.validreactId	Source code
.validreactId_Exch	Source code
.validsysBiolAlg	Source code
ALGORITHM	Man page
EasyConstraint	Man page
Ec_core	Man page
MAXIMUM	Man page
METHOD	Man page
OPT_DIRECTION	Man page
PATH_TO_MODEL	Man page
S	Man page
S,modelorg-method	Man page
S<-	Man page
S<-,modelorg-method	Man page
SOLVER	Man page
SOLVER_CTRL_PARM	Man page
SYBIL_SETTINGS	Man page Source code
Snnz	Man page
Snnz,modelorg-method	Man page
TOLERANCE	Man page
USE_NAMES	Man page
[,fluxDistribution,ANY,ANY,ANY-method	Man page
[,optsol_fluxdel,ANY,ANY,ANY-method	Man page
[,reactId,ANY,ANY,ANY-method	Man page
[,reactId_Exch,ANY,ANY,ANY-method	Man page
addAlgorithm	Man page Source code
addCols	Man page
addCols,optObj_clpAPI,numeric-method	Man page
addCols,optObj_cplexAPI,numeric-method	Man page
addCols,optObj_glpkAPI,numeric-method	Man page
addCols,optObj_lpSolveAPI,numeric-method	Man page
addCols-methods	Man page
addColsToProb	Man page
addColsToProb,optObj_clpAPI-method	Man page
addColsToProb,optObj_cplexAPI-method	Man page
addColsToProb,optObj_glpkAPI-method	Man page
addColsToProb,optObj_lpSolveAPI-method	Man page
addColsToProb-methods	Man page
addExchReact	Man page Source code
addReact	Man page
addReact,modelorg,ANY-method	Man page
addReact,modelorg-method	Man page
addRows	Man page
addRows,optObj_clpAPI,numeric-method	Man page
addRows,optObj_cplexAPI,numeric-method	Man page
addRows,optObj_glpkAPI,numeric-method	Man page
addRows,optObj_lpSolveAPI,numeric-method	Man page
addRows-methods	Man page
addRowsCols	Man page
addRowsCols,optObj_clpAPI,numeric,numeric-method	Man page
addRowsCols,optObj_cplexAPI,numeric,numeric-method	Man page
addRowsCols,optObj_glpkAPI,numeric,numeric-method	Man page
addRowsCols,optObj_lpSolveAPI,numeric,numeric-method	Man page
addRowsCols-methods	Man page
addRowsToProb	Man page
addRowsToProb,optObj_clpAPI-method	Man page
addRowsToProb,optObj_cplexAPI-method	Man page
addRowsToProb,optObj_glpkAPI-method	Man page
addRowsToProb,optObj_lpSolveAPI-method	Man page
addRowsToProb-methods	Man page
addSolver	Man page Source code
alg_par	Man page
alg_par,optsol-method	Man page
alg_par,sysBiolAlg-method	Man page
alg_par<-	Man page
alg_par<-,optsol-method	Man page
alg_par<-,sysBiolAlg-method	Man page
algorithm	Man page
algorithm,optsol-method	Man page
algorithm,sysBiolAlg-method	Man page
algorithm<-	Man page
algorithm<-,optsol-method	Man page
algorithm<-,sysBiolAlg-method	Man page
allGenes	Man page
allGenes,modelorg-method	Man page
allGenes<-	Man page
allGenes<-,modelorg-method	Man page
applyChanges	Man page
applyChanges,sysBiolAlg-method	Man page
applyChanges,sysBiolAlg_room-method	Man page
applyChanges-methods	Man page
backupProb	Man page
backupProb,optObj_clpAPI-method	Man page
backupProb,optObj_cplexAPI-method	Man page
backupProb,optObj_glpkAPI-method	Man page
backupProb,optObj_lpSolveAPI-method	Man page
backupProb-methods	Man page
blReact	Man page
blReact,optsol_fluxVar-method	Man page
blocked	Man page
blocked,optsol_blockedReact-method	Man page
blocked<-	Man page
blocked<-,optsol_blockedReact-method	Man page
blockedReact	Man page Source code
changeBounds	Man page Source code
changeColsBnds	Man page
changeColsBnds,optObj_clpAPI-method	Man page
changeColsBnds,optObj_cplexAPI-method	Man page
changeColsBnds,optObj_glpkAPI-method	Man page
changeColsBnds,optObj_lpSolveAPI-method	Man page
changeColsBnds-methods	Man page
changeColsBndsObjCoefs	Man page
changeColsBndsObjCoefs,optObj_clpAPI-method	Man page
changeColsBndsObjCoefs,optObj_cplexAPI-method	Man page
changeColsBndsObjCoefs,optObj_glpkAPI-method	Man page
changeColsBndsObjCoefs,optObj_lpSolveAPI-method	Man page
changeColsBndsObjCoefs-methods	Man page
changeGPR	Man page Source code
changeMatrixRow	Man page
changeMatrixRow,optObj_cplexAPI-method	Man page
changeMatrixRow,optObj_glpkAPI-method	Man page
changeMatrixRow,optObj_lpSolveAPI-method	Man page
changeMatrixRow-methods	Man page
changeMaxObj	Man page
changeMaxObj,sysBiolAlg_mtf-method	Man page
changeObjCoefs	Man page
changeObjCoefs,optObj_clpAPI-method	Man page
changeObjCoefs,optObj_cplexAPI-method	Man page
changeObjCoefs,optObj_glpkAPI-method	Man page
changeObjCoefs,optObj_lpSolveAPI-method	Man page
changeObjCoefs-methods	Man page
changeObjFunc	Man page Source code
changeRowsBnds	Man page
changeRowsBnds,optObj_clpAPI-method	Man page
changeRowsBnds,optObj_cplexAPI-method	Man page
changeRowsBnds,optObj_glpkAPI-method	Man page
changeRowsBnds,optObj_lpSolveAPI-method	Man page
changeRowsBnds-methods	Man page
changeUptake	Man page
changeUptake,modelorg-method	Man page
changeUptake-methods	Man page
checkAlgorithm	Man page Source code
checkDefaultMethod	Man page Source code
checkOptSol	Man page
checkOptSol,optsol-method	Man page
checkOptSol-methods	Man page
checkReactId	Man page Source code
checkSolStat	Man page Source code
checkStat	Man page
checkStat,optsol-method	Man page
checkVersion	Man page
checkVersion,modelorg	Man page
checkVersion,modelorg-method	Man page
checkVersion-methods	Man page
checksol	Man page Source code
checksol-class	Man page
chlb	Man page
chlb,optsol_fluxdel-method	Man page
chlb<-	Man page
chlb<-,optsol_fluxdel-method	Man page
chub	Man page
chub,optsol_fluxdel-method	Man page
chub<-	Man page
chub<-,optsol_fluxdel-method	Man page
clpPtr-class	Man page
cmd	Man page
cmd,ppProc-method	Man page
cmd<-	Man page
cmd<-,ppProc-method	Man page
comp_attr	Man page Man page
comp_attr,modelorg-method	Man page
comp_attr,react-method	Man page
comp_attr<-	Man page Man page
comp_attr<-,modelorg-method	Man page
comp_attr<-,react-method	Man page
cplexPointer-class	Man page
cplexPtr-class	Man page
cpsol	Man page
cpsol,optsol_genedel-method	Man page
ctrlfl	Man page
ctrlfl,optsol_phpp-method	Man page
ctrlfl,optsol_robAna-method	Man page
ctrlfl<-	Man page
ctrlfl<-,optsol_phpp-method	Man page
ctrlfl<-,optsol_robAna-method	Man page
ctrlr	Man page
ctrlr,optsol_robAna-method	Man page
ctrlr<-	Man page
ctrlr<-,optsol_robAna-method	Man page
deadEndMetabolites	Man page
deadEndMetabolites,modelorg-method	Man page
deadEndMetabolites-methods	Man page
delProb	Man page
delProb,optObj_clpAPI-method	Man page
delProb,optObj_cplexAPI-method	Man page
delProb,optObj_glpkAPI-method	Man page
delProb,optObj_lpSolveAPI-method	Man page
delProb-methods	Man page
deleted	Man page
deleted,optsol_fluxdel-method	Man page
deleted,optsol_genedel-method	Man page
dels	Man page
dels,optsol_fluxdel-method	Man page
dels<-	Man page
dels<-,optsol_fluxdel-method	Man page
didFoot	Man page
didFoot,sybilLog-method	Man page
didFoot<-	Man page
didFoot<-,sybilLog-method	Man page
dim,modelorg-method	Man page
dim,optObj-method	Man page
doubleFluxDel	Man page Source code
doubleGeneDel	Man page Source code
doubleReact	Man page Source code
editEnvir	Man page Source code
emsg	Man page
emsg,sybilError-method	Man page
emsg<-	Man page
emsg<-,sybilError-method	Man page
enum	Man page
enum,sybilError-method	Man page
enum<-	Man page
enum<-,sybilError-method	Man page
ex_met	Man page
ex_met,summaryOptsol-method	Man page
ex_val	Man page
ex_val,summaryOptsol-method	Man page
exit_code	Man page
exit_code,checksol-method	Man page
exit_code<-	Man page
exit_code<-,checksol-method	Man page
exit_meaning	Man page
exit_meaning,checksol-method	Man page
exit_meaning<-	Man page
exit_meaning<-,checksol-method	Man page
exit_num	Man page
exit_num,checksol-method	Man page
exit_num<-	Man page
exit_num<-,checksol-method	Man page
fba	Man page
fbaEasyConstraint	Man page
fenc	Man page
fenc,sybilLog-method	Man page
fenc<-	Man page
fenc<-,sybilLog-method	Man page
fh	Man page
fh,sybilLog-method	Man page
fh<-	Man page
fh<-,sybilLog-method	Man page
file-class	Man page
findExchReact	Man page Source code
fldind	Man page
fldind,optsol-method	Man page
fldind,sysBiolAlg-method	Man page
fldind<-	Man page
fldind<-,optsol-method	Man page
fldind<-,sysBiolAlg-method	Man page
fluxDistribution	Man page Source code
fluxDistribution-class	Man page
fluxVar	Man page Source code
fluxdels	Man page
fluxdels,optsol_genedel-method	Man page
fluxdels<-	Man page
fluxdels<-,optsol_genedel-method	Man page
fluxdist	Man page
fluxdist,optsol-method	Man page
fluxdist<-	Man page
fluxdist<-,optsol-method	Man page
fluxes	Man page
fluxes,fluxDistribution-method	Man page
fluxes,optsol-method	Man page
fluxes<-	Man page
fluxes<-,fluxDistribution-method	Man page
fluxes<-,optsol-method	Man page
fname	Man page
fname,sybilLog-method	Man page
fname<-	Man page
fname<-,sybilLog-method	Man page
fpath	Man page
fpath,sybilLog-method	Man page
fpath<-	Man page
fpath<-,sybilLog-method	Man page
fv	Man page
geneDel	Man page Source code
geneDeletion	Man page Source code
genes	Man page Man page
genes,modelorg-method	Man page
genes,react-method	Man page
genes<-	Man page Man page
genes<-,modelorg-method	Man page
genes<-,react-method	Man page
getColPrim	Man page
getColPrim,optObj_clpAPI,numeric-method	Man page
getColPrim,optObj_cplexAPI,numeric-method	Man page
getColPrim,optObj_glpkAPI,numeric-method	Man page
getColPrim,optObj_lpSolveAPI,numeric-method	Man page
getColPrim-methods	Man page
getColsLowBnds	Man page
getColsLowBnds,optObj_clpAPI,numeric-method	Man page
getColsLowBnds,optObj_cplexAPI,numeric-method	Man page
getColsLowBnds,optObj_glpkAPI,numeric-method	Man page
getColsLowBnds,optObj_lpSolveAPI,numeric-method	Man page
getColsLowBnds-methods	Man page
getColsNames	Man page
getColsNames,optObj_cplexAPI,numeric-method	Man page
getColsNames,optObj_glpkAPI,numeric-method	Man page
getColsNames,optObj_lpSolveAPI,numeric-method	Man page
getColsNames-methods	Man page
getColsUppBnds	Man page
getColsUppBnds,optObj_clpAPI,numeric-method	Man page
getColsUppBnds,optObj_cplexAPI,numeric-method	Man page
getColsUppBnds,optObj_glpkAPI,numeric-method	Man page
getColsUppBnds,optObj_lpSolveAPI,numeric-method	Man page
getColsUppBnds-methods	Man page
getFluxDist	Man page
getFluxDist,optObj_clpAPI-method	Man page
getFluxDist,optObj_cplexAPI-method	Man page
getFluxDist,optObj_glpkAPI-method	Man page
getFluxDist,optObj_lpSolveAPI-method	Man page
getFluxDist,optsol-method	Man page
getFluxDist-methods	Man page
getMeanReturn	Man page Source code
getMeanStatus	Man page Source code
getNetFlux	Man page Source code
getNumCols	Man page
getNumCols,optObj_clpAPI-method	Man page
getNumCols,optObj_cplexAPI-method	Man page
getNumCols,optObj_glpkAPI-method	Man page
getNumCols,optObj_lpSolveAPI-method	Man page
getNumCols-methods	Man page
getNumNnz	Man page
getNumNnz,optObj_clpAPI-method	Man page
getNumNnz,optObj_cplexAPI-method	Man page
getNumNnz,optObj_glpkAPI-method	Man page
getNumNnz-methods	Man page
getNumRows	Man page
getNumRows,optObj_clpAPI-method	Man page
getNumRows,optObj_cplexAPI-method	Man page
getNumRows,optObj_glpkAPI-method	Man page
getNumRows,optObj_lpSolveAPI-method	Man page
getNumRows-methods	Man page
getObjCoefs	Man page
getObjCoefs,optObj_clpAPI,numeric-method	Man page
getObjCoefs,optObj_cplexAPI,numeric-method	Man page
getObjCoefs,optObj_glpkAPI,numeric-method	Man page
getObjCoefs,optObj_lpSolveAPI,numeric-method	Man page
getObjCoefs-methods	Man page
getObjDir	Man page
getObjDir,optObj_clpAPI-method	Man page
getObjDir,optObj_cplexAPI-method	Man page
getObjDir,optObj_glpkAPI-method	Man page
getObjDir,optObj_lpSolveAPI-method	Man page
getObjDir-methods	Man page
getObjVal	Man page
getObjVal,optObj_clpAPI-method	Man page
getObjVal,optObj_cplexAPI-method	Man page
getObjVal,optObj_glpkAPI-method	Man page
getObjVal,optObj_lpSolveAPI-method	Man page
getObjVal-methods	Man page
getReaction	Man page
getReaction,modelorg,ANY-method	Man page
getReaction,modelorg-method	Man page
getRedCosts	Man page
getRedCosts,optObj_clpAPI-method	Man page
getRedCosts,optObj_cplexAPI-method	Man page
getRedCosts,optObj_glpkAPI-method	Man page
getRedCosts,optObj_lpSolveAPI-method	Man page
getRedCosts,optsol_phpp-method	Man page
getRedCosts-methods	Man page
getRowsLowBnds	Man page
getRowsLowBnds,optObj_clpAPI,numeric-method	Man page
getRowsLowBnds,optObj_cplexAPI,numeric-method	Man page
getRowsLowBnds,optObj_glpkAPI,numeric-method	Man page
getRowsLowBnds,optObj_lpSolveAPI,numeric-method	Man page
getRowsLowBnds-methods	Man page
getRowsNames	Man page
getRowsNames,optObj_cplexAPI,numeric-method	Man page
getRowsNames,optObj_glpkAPI,numeric-method	Man page
getRowsNames,optObj_lpSolveAPI,numeric-method	Man page
getRowsNames-methods	Man page
getRowsUppBnds	Man page
getRowsUppBnds,optObj_clpAPI,numeric-method	Man page
getRowsUppBnds,optObj_cplexAPI,numeric-method	Man page
getRowsUppBnds,optObj_glpkAPI,numeric-method	Man page
getRowsUppBnds,optObj_lpSolveAPI,numeric-method	Man page
getRowsUppBnds-methods	Man page
getSolStat	Man page
getSolStat,optObj_clpAPI-method	Man page
getSolStat,optObj_cplexAPI-method	Man page
getSolStat,optObj_glpkAPI-method	Man page
getSolStat,optObj_lpSolveAPI-method	Man page
getSolStat-methods	Man page
getSolverParm	Man page
getSolverParm,optObj_clpAPI-method	Man page
getSolverParm,optObj_cplexAPI-method	Man page
getSolverParm,optObj_glpkAPI-method	Man page
getSolverParm,optObj_lpSolveAPI-method	Man page
getSolverParm-methods	Man page
getsybilenv	Man page Source code
glpkPtr-class	Man page
gpr	Man page Man page
gpr,modelorg-method	Man page
gpr,react-method	Man page
gpr<-	Man page Man page
gpr<-,modelorg-method	Man page
gpr<-,react-method	Man page
gprRule	Man page
gprRule,react-method	Man page
gprRule<-	Man page
gprRule<-,react-method	Man page
gprRules	Man page
gprRules,modelorg-method	Man page
gprRules<-	Man page
gprRules<-,modelorg-method	Man page
hasEffect	Man page
hasEffect,optsol_genedel-method	Man page
hasEffect<-	Man page
hasEffect<-,optsol_genedel-method	Man page
image,summaryOptsol-method	Man page
ind	Man page
ind,ppProc-method	Man page
ind2id	Man page
ind2id,optsol_fluxdel-method	Man page
ind2id,optsol_genedel-method	Man page
ind<-	Man page
ind<-,ppProc-method	Man page
initProb	Man page
initProb,optObj_clpAPI-method	Man page
initProb,optObj_cplexAPI-method	Man page
initProb,optObj_glpkAPI-method	Man page
initProb,optObj_lpSolveAPI-method	Man page
initProb-methods	Man page
irrev	Man page
irrev,modelorg_irrev-method	Man page
irrev2rev	Man page
irrev2rev,modelorg_irrev-method	Man page
irrev2rev<-	Man page
irrev2rev<-,modelorg_irrev-method	Man page
irrev<-	Man page
irrev<-,modelorg_irrev-method	Man page
length,netFlux-method	Man page
length,optsol-method	Man page
length,reactId-method	Man page
lethal	Man page
lethal,optsol_fluxdel-method	Man page
lmoma	Man page
loadLPprob	Man page
loadLPprob,optObj_clpAPI-method	Man page
loadLPprob,optObj_cplexAPI-method	Man page
loadLPprob,optObj_glpkAPI-method	Man page
loadLPprob,optObj_lpSolveAPI-method	Man page
loadLPprob-methods	Man page
loadMatrixPerColumnLPSOLVE	Man page Source code
loadQobj	Man page
loadQobj,optObj_cplexAPI,Matrix-method	Man page
loadQobj,optObj_cplexAPI,numeric-method	Man page
loadQobj-methods	Man page
logCall	Man page
logCall,sybilLog-method	Man page
logClose<-	Man page
logClose<-,sybilLog-method	Man page
logComment	Man page
logComment,sybilLog-method	Man page
logError	Man page
logError,sybilLog,ANY,ANY-method	Man page
logError,sybilLog,ANY,numeric-method	Man page
logError,sybilLog-method	Man page
logFH	Man page
logFH,sybilLog-method	Man page
logFileFH	Man page
logFoot<-	Man page
logFoot<-,sybilLog-method	Man page
logHead	Man page
logHead,sybilLog-method	Man page
logMessage	Man page
logMessage,sybilLog-method	Man page
logOptimization	Man page
logOptimization,sybilLog-method	Man page
logOptimizationTH	Man page
logOptimizationTH,sybilLog-method	Man page
logStep<-	Man page
logStep<-,sybilLog-method	Man page
logWarning	Man page
logWarning,sybilLog-method	Man page
loglevel	Man page
loglevel,sybilLog-method	Man page
loglevel<-	Man page
loglevel<-,sybilLog-method	Man page
lowbnd	Man page Man page
lowbnd,modelorg-method	Man page
lowbnd,react-method	Man page
lowbnd,reactId_Exch-method	Man page
lowbnd<-	Man page Man page
lowbnd<-,modelorg-method	Man page
lowbnd<-,react-method	Man page
lowbnd<-,reactId_Exch-method	Man page
lpExtPtr-class	Man page
lp_dir	Man page
lp_dir,optsol-method	Man page
lp_dir<-	Man page
lp_dir<-,optsol,character-method	Man page
lp_dir<-,optsol,factor-method	Man page
lp_dir<-,optsol,numeric-method	Man page
lp_num_cols	Man page
lp_num_cols,optsol-method	Man page
lp_num_cols<-	Man page
lp_num_cols<-,optsol-method	Man page
lp_num_rows	Man page
lp_num_rows,optsol-method	Man page
lp_num_rows<-	Man page
lp_num_rows<-,optsol-method	Man page
lp_obj	Man page
lp_obj,optsol-method	Man page
lp_obj<-	Man page
lp_obj<-,optsol-method	Man page
lp_ok	Man page
lp_ok,optsol-method	Man page
lp_ok<-	Man page
lp_ok<-,optsol-method	Man page
lp_stat	Man page
lp_stat,optsol-method	Man page
lp_stat<-	Man page
lp_stat<-,optsol-method	Man page
lstname	Man page
lstname,sybilLog-method	Man page
makeOptsolMO	Man page Source code
matchrev	Man page
matchrev,modelorg_irrev-method	Man page
matchrev<-	Man page
matchrev<-,modelorg_irrev-method	Man page
maxSol	Man page
maxSol,optsol_blockedReact-method	Man page
maxSol,optsol_fluxVar-method	Man page
mergeReact2Modelorg	Man page Source code
met_attr	Man page Man page
met_attr,modelorg-method	Man page
met_attr,react-method	Man page
met_attr<-	Man page Man page
met_attr<-,modelorg-method	Man page
met_attr<-,react-method	Man page
met_comp	Man page Man page
met_comp,modelorg-method	Man page
met_comp,react-method	Man page
met_comp<-	Man page Man page
met_comp<-,modelorg-method	Man page
met_comp<-,react-method	Man page
met_de	Man page
met_de,modelorg-method	Man page
met_de<-	Man page
met_de<-,modelorg-method	Man page
met_id	Man page Man page
met_id,modelorg-method	Man page
met_id,react-method	Man page
met_id,reactId_Exch-method	Man page
met_id<-	Man page Man page
met_id<-,modelorg-method	Man page
met_id<-,react-method	Man page
met_id<-,reactId_Exch-method	Man page
met_name	Man page Man page
met_name,modelorg-method	Man page
met_name,react-method	Man page
met_name<-	Man page Man page
met_name<-,modelorg-method	Man page
met_name<-,react-method	Man page
met_num	Man page
met_num,modelorg-method	Man page
met_num<-	Man page
met_num<-,modelorg-method	Man page
met_pos	Man page
met_pos,reactId_Exch-method	Man page
met_pos<-	Man page
met_pos<-,reactId_Exch-method	Man page
met_single	Man page
met_single,modelorg-method	Man page
met_single<-	Man page
met_single<-,modelorg-method	Man page
method	Man page
method,optObj-method	Man page
method,optsol-method	Man page
method<-	Man page
method<-,optsol-method	Man page
minSol	Man page
minSol,optsol_blockedReact-method	Man page
minSol,optsol_fluxVar-method	Man page
mod2irrev	Man page Source code
mod_attr	Man page Man page
mod_attr,modelorg-method	Man page
mod_attr,react-method	Man page
mod_attr<-	Man page Man page
mod_attr<-,modelorg-method	Man page
mod_attr<-,react-method	Man page
mod_compart	Man page
mod_compart,modelorg-method	Man page
mod_compart<-	Man page
mod_compart<-,modelorg-method	Man page
mod_desc	Man page
mod_desc,modelorg-method	Man page
mod_desc<-	Man page
mod_desc<-,modelorg-method	Man page
mod_id	Man page
mod_id,modelorg-method	Man page
mod_id,optsol-method	Man page
mod_id,reactId-method	Man page
mod_id,summaryOptsol-method	Man page
mod_id<-	Man page
mod_id<-,modelorg-method	Man page
mod_id<-,optsol-method	Man page
mod_id<-,reactId-method	Man page
mod_id<-,summaryOptsol-method	Man page
mod_key	Man page
mod_key,modelorg-method	Man page
mod_key,optsol-method	Man page
mod_key,reactId-method	Man page
mod_key,summaryOptsol-method	Man page
mod_key<-	Man page
mod_key<-,modelorg-method	Man page
mod_key<-,optsol-method	Man page
mod_key<-,reactId-method	Man page
mod_key<-,summaryOptsol-method	Man page
mod_name	Man page
mod_name,modelorg-method	Man page
mod_name<-	Man page
mod_name<-,modelorg-method	Man page
mod_obj	Man page
mod_obj,optsol-method	Man page
mod_obj,summaryOptsol-method	Man page
mod_obj<-	Man page
mod_obj<-,summaryOptsol-method	Man page
modelorg	Man page Source code
modelorg-class	Man page
modelorg2ExPA	Man page Source code
modelorg2text	Man page Source code
modelorg2tsv	Man page Source code
modelorg_irrev	Man page Source code
modelorg_irrev-class	Man page
moma	Man page
mtf	Man page
mtfEasyConstraint	Man page
multiDel	Man page Source code
nc	Man page
nc,sysBiolAlg-method	Man page
nc<-	Man page
nc<-,sysBiolAlg-method	Man page
netFlux	Man page
netFlux-class	Man page
nfluxes	Man page
nfluxes,optsol-method	Man page
nnzero,fluxDistribution-method	Man page
nnzero,summaryOptsol-method	Man page
nr	Man page
nr,sysBiolAlg-method	Man page
nr<-	Man page
nr<-,sysBiolAlg-method	Man page
num_of_fluxes	Man page
num_of_fluxes,fluxDistribution-method	Man page
num_of_prob	Man page
num_of_prob,checksol-method	Man page
num_of_prob,optsol-method	Man page
num_of_prob<-	Man page
num_of_prob<-,checksol-method	Man page
num_of_prob<-,optsol-method	Man page
nvar	Man page
nvar,fluxDistribution-method	Man page
nzeros	Man page
nzeros,summaryOptsol-method	Man page
obj_coef	Man page Man page
obj_coef,modelorg-method	Man page
obj_coef,optsol-method	Man page
obj_coef,react-method	Man page
obj_coef<-	Man page Man page
obj_coef<-,modelorg-method	Man page
obj_coef<-,optsol-method	Man page
obj_coef<-,react-method	Man page
obj_func	Man page
obj_func,optsol-method	Man page
obj_func<-	Man page
obj_func<-,optsol-method	Man page
object	Man page
oneFluxDel	Man page Source code
oneGeneDel	Man page Source code
onlyChangeGPR	Man page Source code
onlyCheckGPR	Man page Source code
optObj	Man page Source code
optObj-class	Man page
optObj_clpAPI-class	Man page
optObj_cplexAPI-class	Man page
optObj_glpkAPI-class	Man page
optObj_lpSolveAPI-class	Man page
optimizeProb	Man page
optimizeProb,modelorg-method	Man page
optimizeProb,sysBiolAlg-method	Man page
optimizeProb-methods	Man page
optimizer	Man page Source code
optsol	Man page Source code
optsol-class	Man page
optsol_blockedReact-class	Man page
optsol_fluxVar-class	Man page
optsol_fluxdel-class	Man page
optsol_genedel-class	Man page
optsol_optimizeProb-class	Man page
optsol_phpp-class	Man page
optsol_robAna-class	Man page
pa	Man page
pa,ppProc-method	Man page
pa<-	Man page
pa<-,ppProc-method	Man page
phpp	Man page Source code
plot,fluxDistribution,missing-method	Man page
plot,optsol,missing-method	Man page
plot,optsol_fluxVar,missing-method	Man page
plot,optsol_phpp,character-method	Man page
plot,optsol_phpp,missing-method	Man page
plot,optsol_robAna,missing-method	Man page
plot,summaryOptsol,missing-method	Man page
plotRangeVar	Man page
plotRangeVar,optsol_fluxVar-method	Man page
pointerToProb	Man page
pointerToProb-class	Man page
postProc	Man page
postProc,optsol_optimizeProb-method	Man page
postProc<-	Man page
postProc<-,optsol_optimizeProb-method	Man page
ppProc	Man page Source code
ppProc-class	Man page
preProc	Man page
preProc,optsol_optimizeProb-method	Man page
preProc<-	Man page
preProc<-,optsol_optimizeProb-method	Man page
printExchange	Man page
printExchange,summaryOptsol-method	Man page
printMetabolite	Man page
printMetabolite,modelorg-method	Man page
printMetabolite-methods	Man page
printObjFunc	Man page
printObjFunc,modelorg-method	Man page
printReaction	Man page
printReaction,modelorg,ANY-method	Man page
printReaction,react,ANY-method	Man page
printReaction,summaryOptsol,modelorg-method	Man page
printReaction-methods	Man page
probType	Man page
probType,optObj-method	Man page
problem	Man page
problem,sysBiolAlg-method	Man page
promptSysBiolAlg	Man page Source code
rate	Man page
rate,netFlux-method	Man page
react	Man page
react,optsol_blockedReact-method	Man page
react,optsol_fluxVar-method	Man page
react-class	Man page
react<-	Man page
react<-,optsol_blockedReact-method	Man page
react<-,optsol_fluxVar-method	Man page
reactId	Man page
reactId-class	Man page
reactId_Exch	Man page
reactId_Exch-class	Man page
react_attr	Man page Man page
react_attr,modelorg-method	Man page
react_attr,react-method	Man page
react_attr<-	Man page Man page
react_attr<-,modelorg-method	Man page
react_attr<-,react-method	Man page
react_de	Man page Man page
react_de,modelorg-method	Man page
react_de,react-method	Man page
react_de<-	Man page Man page
react_de<-,modelorg-method	Man page
react_de<-,react-method	Man page
react_id	Man page Man page
react_id,modelorg-method	Man page
react_id,netFlux-method	Man page
react_id,optsol-method	Man page
react_id,react-method	Man page
react_id,reactId-method	Man page
react_id<-	Man page Man page
react_id<-,modelorg-method	Man page
react_id<-,netFlux-method	Man page
react_id<-,optsol-method	Man page
react_id<-,react-method	Man page
react_id<-,reactId-method	Man page
react_name	Man page Man page
react_name,modelorg-method	Man page
react_name,react-method	Man page
react_name<-	Man page Man page
react_name<-,modelorg-method	Man page
react_name<-,react-method	Man page
react_num	Man page
react_num,modelorg-method	Man page
react_num<-	Man page
react_num<-,modelorg-method	Man page
react_pos	Man page
react_pos,reactId-method	Man page
react_pos<-	Man page
react_pos<-,reactId-method	Man page
react_rev	Man page Man page
react_rev,modelorg-method	Man page
react_rev,react-method	Man page
react_rev<-	Man page Man page
react_rev<-,modelorg-method	Man page
react_rev<-,react-method	Man page
react_single	Man page Man page
react_single,modelorg-method	Man page
react_single,react-method	Man page
react_single<-	Man page Man page
react_single<-,modelorg-method	Man page
react_single<-,react-method	Man page
readModel	Man page
readProb	Man page
readProb,optObj_clpAPI,character-method	Man page
readProb,optObj_cplexAPI,character-method	Man page
readProb,optObj_glpkAPI,character-method	Man page
readProb,optObj_lpSolveAPI,character-method	Man page
readProb-methods	Man page
readTEXTmod	Man page Source code
readTSVmod	Man page Source code
resetChanges	Man page
resetChanges,sysBiolAlg-method	Man page
resetChanges,sysBiolAlg_room-method	Man page
resetChanges-methods	Man page
return_codeLPSOLVE	Man page Source code
rev2irrev	Man page
rev2irrev,modelorg_irrev-method	Man page
rev2irrev<-	Man page
rev2irrev<-,modelorg_irrev-method	Man page
rmReact	Man page Source code
robAna	Man page Source code
room	Man page
rxnGeneMat	Man page
rxnGeneMat,modelorg-method	Man page
rxnGeneMat<-	Man page
rxnGeneMat<-,modelorg-method	Man page
s	Man page
s,react-method	Man page
s<-	Man page
s<-,react-method	Man page
scaleProb	Man page
scaleProb,optObj_clpAPI-method	Man page
scaleProb,optObj_cplexAPI-method	Man page
scaleProb,optObj_glpkAPI-method	Man page
scaleProb,optObj_lpSolveAPI-method	Man page
scaleProb-methods	Man page
sensitivityAnalysis	Man page
sensitivityAnalysis,optObj_cplexAPI-method	Man page
sensitivityAnalysis,optObj_glpkAPI-method	Man page
sensitivityAnalysis-methods	Man page
setColsNames	Man page
setColsNames,optObj_clpAPI,numeric,character-method	Man page
setColsNames,optObj_cplexAPI,numeric,character-method	Man page
setColsNames,optObj_glpkAPI,numeric,character-method	Man page
setColsNames,optObj_lpSolveAPI,numeric,character-method	Man page
setColsNames-methods	Man page
setObjDir	Man page
setObjDir,optObj_clpAPI,character-method	Man page
setObjDir,optObj_clpAPI,numeric-method	Man page
setObjDir,optObj_cplexAPI,character-method	Man page
setObjDir,optObj_cplexAPI,integer-method	Man page
setObjDir,optObj_cplexAPI,numeric-method	Man page
setObjDir,optObj_glpkAPI,character-method	Man page
setObjDir,optObj_glpkAPI,integer-method	Man page
setObjDir,optObj_glpkAPI,numeric-method	Man page
setObjDir,optObj_lpSolveAPI,character-method	Man page
setObjDir,optObj_lpSolveAPI,numeric-method	Man page
setObjDir-methods	Man page
setRhsZero	Man page
setRhsZero,optObj_clpAPI-method	Man page
setRhsZero,optObj_cplexAPI-method	Man page
setRhsZero,optObj_glpkAPI-method	Man page
setRhsZero,optObj_lpSolveAPI-method	Man page
setRhsZero-methods	Man page
setRowsNames	Man page
setRowsNames,optObj_clpAPI,numeric,character-method	Man page
setRowsNames,optObj_cplexAPI,numeric,character-method	Man page
setRowsNames,optObj_glpkAPI,numeric,character-method	Man page
setRowsNames,optObj_lpSolveAPI,numeric,character-method	Man page
setRowsNames-methods	Man page
setSolverParm	Man page
setSolverParm,optObj_clpAPI-method	Man page
setSolverParm,optObj_cplexAPI-method	Man page
setSolverParm,optObj_glpkAPI-method	Man page
setSolverParm,optObj_lpSolveAPI-method	Man page
setSolverParm-methods	Man page
show,checksol-method	Man page
show,modelorg-method	Man page
show,optsol-method	Man page
shrinkMatrix	Man page
shrinkMatrix,modelorg-method	Man page
shrinkMatrix-methods	Man page
singletonMetabolites	Man page
singletonMetabolites,modelorg-method	Man page
singletonMetabolites-methods	Man page
solveLp	Man page
solveLp,optObj_clpAPI-method	Man page
solveLp,optObj_cplexAPI-method	Man page
solveLp,optObj_glpkAPI-method	Man page
solveLp,optObj_lpSolveAPI-method	Man page
solveLp-methods	Man page
solver	Man page
solver,optObj-method	Man page
solver,optsol-method	Man page
solver<-	Man page
solver<-,optsol-method	Man page
status_code	Man page
status_code,checksol-method	Man page
status_code<-	Man page
status_code<-,checksol-method	Man page
status_meaning	Man page
status_meaning,checksol-method	Man page
status_meaning<-	Man page
status_meaning<-,checksol-method	Man page
status_num	Man page
status_num,checksol-method	Man page
status_num<-	Man page
status_num<-,checksol-method	Man page
stclear	Man page Source code
stexists	Man page Source code
stfirst	Man page Source code
stinit	Man page Source code
stlength	Man page Source code
stlist	Man page Source code
stpop	Man page Source code
stpush	Man page Source code
stseek	Man page Source code
stshift	Man page Source code
stunshift	Man page Source code
subSys	Man page Man page
subSys,modelorg-method	Man page
subSys,react-method	Man page
subSys<-	Man page Man page
subSys<-,modelorg-method	Man page
subSys<-,react-method	Man page
summaryOptsol	Man page Source code
summaryOptsol-class	Man page
sybil	Man page
sybil-deprecated	Man page
sybil-package	Man page
sybilError	Man page Source code
sybilError-class	Man page
sybilLog	Man page Source code
sybilLog-class	Man page
sybilStack	Man page
sysBiolAlg	Man page Source code
sysBiolAlg-class	Man page
sysBiolAlg_fba	Man page
sysBiolAlg_fba-class	Man page
sysBiolAlg_fbaEasyConstraint	Man page
sysBiolAlg_fbaEasyConstraint-class	Man page
sysBiolAlg_fv	Man page
sysBiolAlg_fv-class	Man page
sysBiolAlg_lmoma	Man page
sysBiolAlg_lmoma-class	Man page
sysBiolAlg_moma	Man page
sysBiolAlg_moma-class	Man page
sysBiolAlg_mtf	Man page
sysBiolAlg_mtf-class	Man page
sysBiolAlg_mtfEasyConstraint	Man page
sysBiolAlg_mtfEasyConstraint-class	Man page
sysBiolAlg_room	Man page
sysBiolAlg_room-class	Man page
upgradeModelorg	Man page Source code
uppbnd	Man page Man page
uppbnd,modelorg-method	Man page
uppbnd,react-method	Man page
uppbnd,reactId_Exch-method	Man page
uppbnd<-	Man page Man page
uppbnd<-,modelorg-method	Man page
uppbnd<-,react-method	Man page
uppbnd<-,reactId_Exch-method	Man page
uptMet	Man page
uptMet,reactId_Exch-method	Man page
uptReact	Man page
uptReact,reactId_Exch-method	Man page
uptake	Man page
uptake,reactId_Exch-method	Man page
uptake<-	Man page
uptake<-,reactId_Exch-method	Man page
verblevel	Man page
verblevel,sybilLog-method	Man page
verblevel<-	Man page
verblevel<-,sybilLog-method	Man page
version	Man page
version,modelorg-method	Man page
version<-	Man page
version<-,modelorg-method	Man page
writeProb	Man page
writeProb,optObj_clpAPI,character-method	Man page
writeProb,optObj_cplexAPI,character-method	Man page
writeProb,optObj_glpkAPI,character-method	Man page
writeProb,optObj_lpSolveAPI,character-method	Man page
writeProb-methods	Man page
wrong_solver_msg	Man page Source code
wrong_type_msg	Man page Source code
ypd	Man page Source code