API for BaderLab/scClustViz
Differential Expression-based scRNAseq Cluster Assessment and Viewing
| Global functions | |
|---|---|
| CalcAllSCV | Man page Source code |
| CalcCGS | Man page |
| CalcCGS,sCVdata-method | Man page |
| CalcDEcombn | Man page |
| CalcDEcombn,sCVdata-method | Man page |
| CalcDEvsRest | Man page |
| CalcDEvsRest,sCVdata-method | Man page |
| CalcSCV | Man page Source code |
| CalcSilhouette | Man page |
| CalcSilhouette,sCVdata-method | Man page |
| ClustGeneStats | Man page |
| ClustGeneStats,sCVdata-method | Man page |
| ClustGeneStats<-,sCVdata-method | Man page |
| ClusterColours,sCVdata-method | Man page |
| ClusterColours<-,sCVdata-method | Man page |
| ClusterNames,sCVdata-method | Man page |
| ClusterNames<-,sCVdata-method | Man page |
| Clusters | Man page |
| Clusters,sCVdata-method | Man page |
| Clusters<-,sCVdata-method | Man page |
| ColNNZ | Man page |
| ColNNZ,dgCMatrix-method | Man page |
| ColNNZ,dgRMatrix-method | Man page |
| ColNNZ,dgTMatrix-method | Man page |
| ColNNZ,matrix-method | Man page |
| DEcombn | Man page |
| DEcombn,sCVdata-method | Man page |
| DEcombn<-,sCVdata-method | Man page |
| DEdist | Man page |
| DEdist,sCVdata,character-method | Man page |
| DEdist,sCVdata,matrix-method | Man page |
| DEdist,sCVdata,missing-method | Man page |
| DEdist,sCVdata,numeric-method | Man page |
| DEdistNN | Man page |
| DEdistNN,matrix-method | Man page |
| DEdistNN,numeric-method | Man page |
| DEmarker | Man page |
| DEmarker,sCVdata-method | Man page |
| DEneighb | Man page |
| DEneighb,sCVdata-method | Man page |
| DEvsRest | Man page |
| DEvsRest,sCVdata-method | Man page |
| DEvsRest<-,sCVdata-method | Man page |
| Param | Man page |
| Param,sCVdata-method | Man page |
| RowNNZ | Man page |
| RowNNZ,dgCMatrix-method | Man page |
| RowNNZ,dgRMatrix-method | Man page |
| RowNNZ,dgTMatrix-method | Man page |
| RowNNZ,matrix-method | Man page |
| Silhouette | Man page |
| Silhouette,sCVdata-method | Man page |
| Silhouette<-,sCVdata-method | Man page |
| addCellMarkersToCGS | Man page Source code |
| compareClusts_DF | Source code |
| cosineSim | Man page Source code |
| dotplotDEgenes | Man page Source code |
| doubleDot | Source code |
| findKeyType | Man page Source code |
| fx_calcCGS | Man page Source code |
| fx_calcCGS_BP | Man page Source code |
| fx_calcDEcombn | Man page Source code |
| fx_calcDEcombn_BP | Man page Source code |
| fx_calcDEcombn_slow | Man page Source code |
| fx_calcDEvsRest | Man page Source code |
| fx_calcDEvsRest_BP | Man page Source code |
| fx_calcDEvsRest_slow | Man page Source code |
| fx_calcDist_cellEmb | Man page Source code |
| fx_calcDist_geneExpr | Man page Source code |
| fx_calcDist_numDE | Man page Source code |
| fx_calcDist_scoreDE | Man page Source code |
| fx_calcEScombn | Man page Source code |
| fx_calcESvsRest | Man page Source code |
| fx_calcESvsRest_BP | Man page Source code |
| fx_calcMarker | Man page Source code |
| fx_calcNeighb | Man page Source code |
| fx_calcSilhouette | Man page Source code |
| geneSearch | Source code |
| getEmb | Man page |
| getExpr | Man page |
| getMD | Man page |
| hasEmb | Man page |
| labelCellTypes | Man page Source code |
| lower.half.circle | Source code |
| map2symbol | Man page Source code |
| meanLogX | Man page Source code |
| origin.label.dist | Man page Source code |
| overlap.edge | Man page Source code |
| overlap.proportion.point | Man page Source code |
| plot_GEboxplot | Man page Source code |
| plot_clustSep | Man page Source code |
| plot_clusterGenes_DEgenes | Man page Source code |
| plot_clusterGenes_markers | Man page Source code |
| plot_clusterGenes_search | Man page Source code |
| plot_compareClusts | Man page Source code |
| plot_compareClusts_DEscatter | Source code |
| plot_compareClusts_MAplot | Source code |
| plot_compareClusts_volcano | Source code |
| plot_deDotplot | Man page Source code |
| plot_mdBarplot | Source code |
| plot_mdBoxplot | Source code |
| plot_mdBoxplotX | Source code |
| plot_mdBoxplotY | Source code |
| plot_mdCompare | Man page Source code |
| plot_mdPerClust | Man page Source code |
| plot_mdScatter | Source code |
| plot_sil | Man page Source code |
| plot_tsne | Man page Source code |
| runShiny | Man page Source code |
| sCVdata | Man page |
| sCVdata-class | Man page |
| sCVparams | Man page |
| sCVparams-class | Man page |
| scClustViz | Man page |
| singleDot | Source code |
| spreadLabels2 | Man page Source code |
| subsetCells | Man page |
| tsne_labels | Man page Source code |
| upper.half.circle | Source code |
