API for CMWbio/geaR
GDS Evolutionary Analysis in R
| Global functions | |
|---|---|
| .cogAd | Source code |
| .cogArgs | Source code |
| .cogDivFAST | Source code |
| .cogDivFULL | Source code |
| .cogNull | Source code |
| .cogOutLoc | Source code |
| .cogOutTre | Source code |
| .convertToNucleotide | Source code |
| .f3fun | Source code |
| .f4fun | Source code |
| .formatCodonStrands | Source code |
| .fourPop | Source code |
| .generatePairs | Source code |
| .getCodonPositions | Source code |
| .getGenes | Source code |
| .initializeGear | Source code |
| .mapCodons | Source code |
| .mapFun | Source code |
| .quiet | Source code |
| .threePop | Source code |
| .validAF | Source code |
| Gmin | Man page Source code |
| Nei82Fst | Man page Source code |
| RND | Man page Source code |
| analyzeCog | Man page |
| analyzeGear | Man page |
| buildCodonDB | Man page |
| cog-class,cog.NULL | Man page |
| cog-class,cog.admixture | Man page |
| cog-class,cog.args | Man page |
| cog-class,cog.diversityFAST | Man page |
| cog-class,cog.diversityFULL | Man page |
| cog-class,cog.outputLoci | Man page |
| cog-class,cog.outputTrees | Man page |
| cog.NULL-class | Man page |
| cog.admixture-class | Man page |
| cog.args-class | Man page |
| cog.diversityFAST-class | Man page |
| cog.diversityFULL-class | Man page |
| cog.outputLoci-class | Man page |
| cog.outputTrees-class | Man page |
| dmax | Man page Source code |
| dmin | Man page Source code |
| dxyAF | Man page Source code |
| eigenMapMatMult | Source code |
| filterCodonDB | Man page |
| gear-class | Man page |
| genoDist | Man page Source code |
| getAF | Man page Source code |
| getAdmixFromGear | Man page Source code |
| getCodonsFromFasta | Man page Source code |
| getDivFromGear | Man page Source code |
| getGenotypes | Man page Source code |
| getPositionFromDB | Man page |
| makeCog | Man page Source code |
| makeFeatures | Man page |
| makeGear | Man page Source code |
| mergeLoci | Man page |
| neisDa | Man page Source code |
| neisDxy | Man page Source code |
| neisPi | Man page Source code |
| relDxy | Man page Source code |
| snpWindowMaker | Man page |
| snpWindowMaker,data.frame-method | Man page |
| snpWindowMaker,tibble | Man page |
| summarizeStats | Man page Source code Source code |
| validate4FoldCodons | Man page |
| windowMaker | Man page |
| windowMaker,GRanges | Man page |
| windowMaker,GRanges-method | Man page |
| windowMaker,GRangesList | Man page |
| windowMaker,GRangesList-method | Man page |
| windowMaker,data.frame-method | Man page |
| windowMaker,tibble | Man page |
