VariantFisherTestHeatmap: VariantFisherTestHeatmap

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

VariantFisherTestHeatmap

Description

We generate a heatmap showing the Fisher test of somatic variants with the MT variants. Packages I want to remove.

Usage

VariantFisherTestHeatmap(
  fisher_results,
  patient,
  min_alt_cells = 5,
  min_oddsratio = 1,
  verbose = TRUE
)

Arguments

fisher_results	Data.frame with the correlation results.
patient	The patient for this heatmap.
min_alt_cells	Minimum number of mutated cells needed, otherwise an association will not be plotted.
min_oddsratio	Minimum correlation needed.
verbose	Should the function be verbose? Default = TRUE

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.