VariantWiseCorrelation: VariantWiseCorrelation

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

VariantWiseCorrelation

Description

We correlate the variants with each other using the Pearson correlation. This function calls CalculateCorrelationPValue to perform the actual correlation.

Usage

VariantWiseCorrelation(
  variants_list,
  n_cores = 1,
  p_value_adjustment = "fdr",
  value_type = "consensus",
  verbose = TRUE
)

Arguments

variants_list	List of fraction values.
n_cores	Number of cores you want to use. Numeric.
p_value_adjustment	Method for P value adjustment. See p.adjust for details.
value_type	Are we using consensus or other information?
verbose	Should the function be verbose? Default = TRUE

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.