VariantWiseFisherTest: VariantWiseFisherTest

In CostaLab/sigurd: Single cell Genotyping Using RNA Data

VariantWiseFisherTest

Description

We perform the Fisher test to determine which variants are associated. This function calls CalculateFisherTestPValue to perform the actual testing.

Usage

VariantWiseFisherTest(
  variants_list,
  n_cores = 1,
  p_value_adjustment = "fdr",
  verbose = TRUE
)

Arguments

variants_list	List of fraction values.
n_cores	Number of cores you want to use. Numeric.
p_value_adjustment	Method for P value adjustment. See p.adjust for details.
verbose	Should the function be verbose? Default = TRUE

CostaLab/sigurd documentation built on Feb. 10, 2025, 11:08 p.m.