Man pages for GeneSurvey/TCGAGeneReport
Access to Gene Report Data
| filterForCommonSamples | filterForCommonSamples |
| geneSymbolsForDataset | geneSymbolsForDataset |
| geneSymbolsMatchDataset | geneSymbolsMatchDataset |
| get.Chromosome | get.Chromosome |
| getColorsForDiseases | getColorsForDiseases |
| getContrast | getContrast |
| get.Data | get.Data |
| getDataClinical | getDataClinical |
| getData_CombinedHsaMimat_miRNASeq | getData_CombinedHsaMimat_miRNASeq |
| getData_GeneSymbol_Mutations | getData_GeneSymbol_Mutations |
| getData_GeneSymbol_RnaSeq | getData_GeneSymbol_RnaSeq |
| getData_GeneSymbol_RnaSeq2 | getData_GeneSymbol_RnaSeq2 |
| getData_GeneSymbol_SNP6 | getData_GeneSymbol_SNP6 |
| getDataMatrix_GeneSymbol_Meth27 | getDataMatrix_GeneSymbol_Meth27 |
| getDataMatrix_GeneSymbol_Meth450 | getDataMatrix_GeneSymbol_Meth450 |
| getDataObject_CombinedHsaMimat_miRNASeq | getDataObject_CombinedHsaMimat_miRNASeq |
| getDataObject_GeneSymbol_Meth27 | getDataObject_GeneSymbol_Meth27 |
| getDataObject_GeneSymbol_Meth450 | getDataObject_GeneSymbol_Meth450 |
| getDataObject_GeneSymbol_Mutations | getDataObject_GeneSymbol_Mutations |
| getDataObject_GeneSymbol_RnaSeq | getDataObject_GeneSymbol_RnaSeq |
| getDataObject_GeneSymbol_RnaSeq2 | getDataObject_GeneSymbol_RnaSeq2 |
| getDataObject_GeneSymbol_SNP6 | getDataObject_GeneSymbol_SNP6 |
| getDataObject_Probe_Meth27 | getDataObject_Probe_Meth27 |
| getDataObject_Probe_Meth450 | getDataObject_Probe_Meth450 |
| getDataPlatform_CombinedHsaMimat_miRNASeq | getDataPlatform_CombinedHsaMimat_miRNASeq |
| getDataPlatform_GeneSymbol_Mutations | getDataPlatform_GeneSymbol_Mutations |
| getDataPlatform_GeneSymbol_RnaSeq | getDataPlatform_GeneSymbol_RnaSeq |
| getDataPlatform_GeneSymbol_RnaSeq2 | getDataPlatform_GeneSymbol_RnaSeq2 |
| getDataPlatform_GeneSymbol_SNP6 | getDataPlatform_GeneSymbol_SNP6 |
| getDataPlatform_Probe_Meth27 | getDataPlatform_Probe_Meth27 |
| getDataPlatform_Probe_Meth450 | getDataPlatform_Probe_Meth450 |
| getData_Probe_Meth27 | getData_Probe_Meth27 |
| getData_Probe_Meth450 | getData_Probe_Meth450 |
| getDataVersion | getDataVersion |
| get.DerivedFrom | get.DerivedFrom |
| get.GeneId | get.GeneId |
| get.GeneStructure | get.GeneStructure |
| get.GeneSymbol | get.GeneSymbol |
| get.GenomeAnnotations | get.GenomeAnnotations |
| getImputedNAs_CombinedHsaMimat_miRNASeq | getImputedNAs_CombinedHsaMimat_miRNASeq |
| getImputedNAs_GeneSymbol_RnaSeq | getImputedNAs_GeneSymbol_RnaSeq |
| getImputedNAs_GeneSymbol_RnaSeq2 | getImputedNAs_GeneSymbol_RnaSeq2 |
| getImputedNAs_GeneSymbol_SNP6 | getImputedNAs_GeneSymbol_SNP6 |
| getImputedNAs_Probe_Meth27 | getImputedNAs_Probe_Meth27 |
| getImputedNAs_Probe_Meth450 | getImputedNAs_Probe_Meth450 |
| get.LocationEnd | get.LocationEnd |
| get.LocationStart | get.LocationStart |
| getMetadata_GeneByNeighbor_HG18 | getMetadata_GeneByNeighbor_HG18 |
| getMetadata_GeneByNeighbor_HG19 | getMetadata_GeneByNeighbor_HG19 |
| getMetadata_GeneByNeighbor_RnaSeq | getMetadata_GeneByNeighbor_RnaSeq |
| getMetadata_GeneByNeighbor_RnaSeq2 | getMetadata_GeneByNeighbor_RnaSeq |
| getMetadata_Gene_HG18 | getMetadata_Gene_HG18 |
| getMetadata_Gene_HG19 | getMetadata_Gene_HG19 |
| getMetadata_Gene_Mutations | getMetadata_Gene_Mutations |
| getMetadata_Gene_RnaSeq | getMetadata_Gene_RnaSeq |
| getMetadata_Gene_RnaSeq2 | getMetadata_Gene_RnaSeq2 |
| getMetadataPop_BarcodeDisease | getMetadataPop_BarcodeDisease |
| getMetadataPop_BarcodeSamplecode | getMetadataPop_BarcodeSamplecode |
| getMetadataPop_PatientDisease | getMetadataPop_PatientDisease |
| getMetadata_ProbeByNeighbor_Meth27 | getMetadata_ProbeByNeighbor_Meth27 |
| getMetadata_ProbeByNeighbor_Meth450 | getMetadata_ProbeByNeighbor_Meth450 |
| getMetadata_Probe_Meth27 | getMetadata_Probe_Meth27 |
| getMetadata_Probe_Meth450 | getMetadata_Probe_Meth450 |
| get.MimatId | get.MimatId |
| get.MirId | get.MirId |
| getMirs_List_Mimat | getMirs_List_Mimat |
| getMirs_List_Mir | getMirs_List_Mir |
| getMirs_Metadata_Mimat | getMirs_Metadata_Mimat |
| getMirs_Metadata_Mir | getMirs_Metadata_Mir |
| get.MirType | get.MirType |
| get.Name | get.Name |
| getNames_CombinedHsaMimat_miRNASeq | getNames_CombinedHsaMimat_miRNASeq |
| getNames_GeneSymbol_Meth27 | getNames_GeneSymbol_Meth27 |
| getNames_GeneSymbol_Meth450 | getNames_GeneSymbol_Meth450 |
| getNames_GeneSymbol_Mutations | getNames_GeneSymbol_Mutations |
| getNames_GeneSymbol_RnaSeq | getNames_GeneSymbol_RnaSeq |
| getNames_GeneSymbol_RnaSeq2 | getNames_GeneSymbol_RnaSeq2 |
| getNames_GeneSymbol_SNP6 | getNames_GeneSymbol_SNP6 |
| getNames_ProbeFromGeneSymbol_Meth27 | getNames_ProbeFromGeneSymbol_Meth27 |
| getNames_ProbeFromGeneSymbol_Meth450 | getNames_ProbeFromGeneSymbol_Meth450 |
| getNames_Probe_Meth27 | getNames_Probe_Meth27 |
| getNames_Probe_Meth450 | getNames_Probe_Meth450 |
| getOneToOne_GeneSymbol_List | getOneToOne_GeneSymbol_List |
| getOneToOne_GeneSymbol_UCID | getOneToOne_GeneSymbol_UCID |
| getOneToOne_UCID_GeneSymbol | getOneToOne_UCID_GeneSymbol |
| getOneToOne_UCSC_List | getOneToOne_UCSC_List |
| get.ProbeLocation | get.ProbeLocation |
| get.SampleAnnotations | get.SampleAnnotations |
| get.Strand | get.Strand |
| getSynonyms | getSynonyms |
| get.TissueAnnotations | get.TissueAnnotations |
| get.VersionIndex | get.VersionIndex |
| initGeneReport | initGeneReport |
| loadDataObject | loadDataObject |
| plotAssays | plotAssays |
| plot_CombinedHsaMimat_miRNASeq | plot_CombinedHsaMimat_miRNASeq |
| plotGenericOutput | plotGenericOutput |
| plot_GeneSymbol_Meth27 | plot_GeneSymbol_Meth27 |
| plot_GeneSymbol_Meth450 | plot_GeneSymbol_Meth450 |
| plot_GeneSymbol_Mutations | plot_GeneSymbol_Mutations |
| plot_GeneSymbol_RnaSeq | plot_GeneSymbol_RnaSeq |
| plot_GeneSymbol_RnaSeq2 | plot_GeneSymbol_RnaSeq2 |
| plot_GeneSymbol_SNP6 | plot_GeneSymbol_SNP6 |
| plotHeatmapOutput | plotHeatmapOutput |
| plot_Probe_Meth27 | plot_Probe_Meth27 |
| plot_Probe_Meth450 | plot_Probe_Meth450 |
