combinePreds: Combine LTRpred prediction files

In HajkD/LTRpred: De novo functional annotation of retrotransposons

Combine LTRpred prediction files

Description

Given a path to a folder that stores several LTRpred prediction files, this function imports the individual prediction files and combines them to one large LTRpred prediction file.

Usage

combinePreds(folder, quality.filter = FALSE, sim = 70, n.orfs = 0)

Arguments

folder	path to folder in which prediction files are stored.
quality.filter	shall false positives be filtered out as much as possible or not.
sim	If quality.filter = TRUE: LTR similarity threshold. Only putative LTR transposons that fulfill this LTR similarity threshold will be retained.
n.orfs	If quality.filter = TRUE: minimum number of ORFs detected in the putative LTR transposon.

Author(s)

Hajk-Georg Drost

HajkD/LTRpred documentation built on April 22, 2022, 4:35 p.m.