pred2csv | R Documentation |
This function formats the LTR prediction data.frame
generated by LTRharvest
, LTRdigest
, or LTRpred
to a data.frame
in CSV
file format.
pred2csv(LTR.data, output = "output.csv")
LTR.data |
the LTR prediction |
output |
filename of the output CSV file. |
the LTR.data
table in csv format saved to the hard drive.
Hajk-Georg Drost
gff.file <- system.file("TAIR10_chr_all_LTRdigestPrediction.gff", package = "LTRpred") tabout.file <- system.file("TAIR10_chr_all-ltrdigest_tabout.csv" ,package = "LTRpred") LTRfile <- read.prediction(gff.file,tabout.file, program = "LTRdigest") # generate csv file pred2csv(LTRfile$ltr.retrotransposon)
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