quant.space.meta: Quantify the genomic loci space for multiple genomes,...

In HajkD/LTRpred: De novo functional annotation of retrotransposons

Quantify the genomic loci space for multiple genomes, proteomes or Repeat Masker annotation files

Description

Quantification of the genomic loci space (= total length of all annotated genomic features) within a given genome of interest.

Usage

quant.space.meta(folder, type = "proteome")

Arguments

folder	path to the folder storing the genomes, proteomes, or Repeat Masker files of interest.
type	The following genomic features can be quantified: type = 'cds': coding sequence files in fasta format (see read_genome). type = 'proteome': proteome files in fasta format (see read_proteome). type = 'rm': Repeat Masker annotation files in fasta format (see read_rm).

Author(s)

Hajk-Georg Drost

HajkD/LTRpred documentation built on April 22, 2022, 4:35 p.m.