meta.seq.space: Quantification of the repeat space for multiple 'Repeat...

In HajkD/LTRpred: De novo functional annotation of retrotransposons

Quantification of the repeat space for multiple Repeat Masker files

Description

The repeat space for multiple Repeat Masker files is quantified and stored in one tibble.

Usage

meta.seq.space(
  rm.folder,
  type = "rm",
  repeat.type = "all",
  rename = FALSE,
  save.file = TRUE
)

Arguments

rm.folder	file path to the Repeat Masker files.
type	type of input data. Option are: type = "rm" - Repeat Masker files.
repeat.type	type of element for which total repeat space shall be quantified. Options are: repeat.type = "all" include all types of repeats. repeat.type = "ltr" include only LTR retrotransposons.
rename	logical value indicating whether or not long file names shall be transformed to short scientific names.
save.file	logical value indicating whether or not the result tibble shall be stored locally.

Author(s)

Hajk-Georg Drost

HajkD/LTRpred documentation built on April 22, 2022, 4:35 p.m.