pred2orfseqs | R Documentation |
This function allows users to save the sequence of the predicted LTR Transposons or LTRs in a fasta file.
pred2orfseqs(LTRpred.tbl, orf.seq.file, output = "output.fa")
LTRpred.tbl |
the |
orf.seq.file |
the fasta file storing the open reading frame sequences of predicted retroelements.
as returned by the |
output |
the fasta file to which the output sequences shall be stored in. |
The output data.frame
s returned by LTRpred
contain all information of the predicted
LTR retrotransposons that can be used for post-filtering steps. After these post-filtering steps
sequences of the remaining (filtered) candidates can be retrieved by this function.
Hajk-Georg Drost
LTRharvest
, LTRdigest
, LTRpred
, read.prediction
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