pred2GRanges: Format LTR prediction data to 'GRages' object

View source: R/pred2GRanges.R

pred2GRangesR Documentation

Format LTR prediction data to GRages object

Description

This function formats the LTR prediction data.frame generated by LTRpred to a GRages object.

Usage

pred2GRanges(LTR.data, similarity.threshold = 95)

Arguments

LTR.data

the LTR prediction data.frame generated by LTRpred.

similarity.threshold

the LTR similarity threshold that shall be used to define young and old retrotransposons.

Details

The GRages object is defined by the following columns:

  • chromosome

  • start

  • end

  • strand

  • element_name

  • ltr_similarity

  • orfs

  • age

Author(s)

Hajk-Georg Drost


HajkD/LTRpred documentation built on April 22, 2022, 4:35 p.m.