pred2GRanges: Format LTR prediction data to 'GRages' object
In HajkD/LTRpred: De novo functional annotation of retrotransposons
pred2GRanges R Documentation
Format LTR prediction data to GRages object
Description
This function formats the LTR prediction data.frame
generated by LTRpred to a GRages object.
Usage
pred2GRanges(LTR.data, similarity.threshold = 95)
Arguments
LTR.data
the LTR prediction data.frame generated by LTRpred.
similarity.threshold
the LTR similarity threshold that shall be used to define young and old retrotransposons.
Details
The GRages object is defined by the following columns:
-
chromosome
-
start
-
end
-
strand
-
element_name
-
ltr_similarity
-
orfs
-
age
Author(s)
Hajk-Georg Drost
HajkD/LTRpred documentation built on April 22, 2022, 4:35 p.m.
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| pred2GRanges | R Documentation |
Format LTR prediction data to GRages object
Description
This function formats the LTR prediction data.frame
generated by LTRpred to a GRages object.
Usage
pred2GRanges(LTR.data, similarity.threshold = 95)
Arguments
LTR.data |
the LTR prediction |
similarity.threshold |
the LTR similarity threshold that shall be used to define young and old retrotransposons. |
Details
The GRages object is defined by the following columns:
-
chromosome -
start -
end -
strand -
element_name -
ltr_similarity -
orfs -
age
Author(s)
Hajk-Georg Drost
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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