pred2GRanges | R Documentation |
GRages
objectThis function formats the LTR prediction data.frame
generated by LTRpred
to a GRages
object.
pred2GRanges(LTR.data, similarity.threshold = 95)
LTR.data |
the LTR prediction |
similarity.threshold |
the LTR similarity threshold that shall be used to define young and old retrotransposons. |
The GRages
object is defined by the following columns:
chromosome
start
end
strand
element_name
ltr_similarity
orfs
age
Hajk-Georg Drost
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