read.ltrpred: Import 'LTRpred' DataSheet
In HajkD/LTRpred: De novo functional annotation of retrotransposons

read.ltrpred

R Documentation

Import `LTRpred` DataSheet

Description

The *_LTRpred_DataSheet.tsv file generated by LTRpred stores the features of all predicted LTR transposons in a table. This function imports this LTRpred output table.

Usage

read.ltrpred(data.sheet)

Arguments

data.sheet

path to the *_LTRpred_DataSheet.tsv file.

Author(s)

Hajk-Georg Drost

Examples

# example prediction file generated by LTRpred 
pred.file <- system.file("Hsapiens_ChrY_LTRpred_DataSheet.tsv", package = "LTRpred")
# read LTRpred generated prediction file (data sheet)
pred <- read.ltrpred(pred.file)

# or arrange by ltr_similarity
dplyr::arrange(tidy.datasheet(pred), dplyr::desc(ltr_similarity))

HajkD/LTRpred documentation built on April 22, 2022, 4:35 p.m.