motif.count | R Documentation |
Find a specific motif or a sequence of motifs within genomic sequences.
motif.count(seq.file, motif, as.ratio = FALSE)
seq.file |
path to the genomic sequecne file of interest (e.g. LTR TE seqs predicted by
|
motif |
a character string or vector of strings which shall be counted within each sequence. |
as.ratio |
shall count values be returned as asbolute frequency (count value) or as relative frequency (percentage). |
Hajk-Georg Drost
# find number of "CG" motifs in predicted LTR transposons motif.count(seq.file = system.file("LTRseqs.fas",package = "LTRpred"), motif = "CG") # find number of "CG" motifs in predicted LTR transposons: rel. frequency motif.count(seq.file = system.file("LTRseqs.fas",package = "LTRpred"), motif = "CG", as.ratio = TRUE)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.