read.seqs: Import sequences of predicted LTR transposons

View source: R/read.seqs.R

read.seqsR Documentation

Import sequences of predicted LTR transposons

Description

Import sequences of predicted LTR transposons generated by LTRharvest, LTRdigest, or LTRpred.

Usage

read.seqs(seq.file, program = "LTRharvest")

Arguments

seq.file

path to fasta file storing the sequences of predicted LTR transposons generated by LTRharvest, LTRdigest, or LTRpred.

program

program used to generate the LTR transposons specified in seq.file, e.g. program = "LTRpred", program = "LTRdigest", or program = "LTRharvest".

Author(s)

Hajk-Georg Drost


HajkD/LTRpred documentation built on April 22, 2022, 4:35 p.m.