bowtie2: Calls the Bowtie2 executable to align input reads
In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework
Description
Usage
Arguments
Value
Author(s)
Description
Calls the Bowtie2 executable to align input reads.
Usage
1
Arguments
reads1
(required) A vector of FASTQ pathnames of reads.
reads2
(optional; paired-end only) A vector of FASTQ pathnames of mate reads.
indexPrefix
Bowtie2 reference index prefix.
pathnameSAM
Output SAM file.
...
...
gzAllowed
A logical specifying whether gzipped FASTQ files are supported or not.
verbose
See Verbose.
Value
Returns ...
Author(s)
Henrik Bengtsson
HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Calls the Bowtie2 executable to align input reads.
Usage
1 |
Arguments
reads1 |
(required) A |
reads2 |
(optional; paired-end only) A |
indexPrefix |
Bowtie2 reference index prefix. |
pathnameSAM |
Output SAM file. |
... |
... |
gzAllowed |
A |
verbose |
See |
Value
Returns ...
Author(s)
Henrik Bengtsson
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.