buildTopHat2TranscriptomeIndexSet.Bowtie2IndexSet: Calls TopHat to build a transcriptome index

Description Arguments Author(s) References

Description

Calls TopHat to build a transcriptome index.

Arguments

gtf

GtfDataFile to be indexed

outPath

(optional) Output directory for index and log file.

...

Arguments passed to tophat().

skip

If TRUE, the index files are not rebuilt if already available.

verbose

See Verbose.

Author(s)

Taku Tokuyasu

References

[1] TopHat - A spliced read mapper for RNA-Seq, 2015. http://ccb.jhu.edu/software/tophat/


HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.